Pre_GI: BLASTP Hits

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Query: NC_017319:192482:219891 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 219891, End: 220475, Length: 585

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013716:1178383:119164311916431192335693Citrobacter rodentium ICC168, complete genomeT3SS effector protein NleE1e-81302
NC_011601:3338888:335131633513163351990675Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleE-like protein9e-81299
AP010958:3627355:363977336397733640447675Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector NleE-like protein2e-80298
NC_002655:3919545:393196539319653932639675Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-80298
AP010958:5090696:510659351065935107267675Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector NleE-like protein2e-80298
NC_002695:3852233:386465238646523865326675Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-80298
NC_011353:3956630:396904939690493969723675Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeNleE2e-80298
NC_013008:3911356:392377539237753924449675Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector2e-80298
NC_013353:3627355:363977336397733640447675Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector NleE2e-80298
NC_013353:5090696:510659351065935107267675Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector NleE-like protein2e-80298
NC_013364:5083949:509920750992075099881675Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector NleE-like protein2e-80298
NC_013941:3676146:368856636885663689240675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeST47 protein2e-80298
NC_013364:3701895:371376537137653714439675Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector NleE2e-80298
NC_011601:1114104:113820311382031138709507Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleE-like protein with internal deletion of 56 aa1e-35149