Pre_GI: BLASTP Hits

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Query: NC_016822:2201388:2205416 Shigella sonnei 53G, complete genome

Start: 2205416, End: 2205775, Length: 360

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2091249:209124920912492092169921Escherichia coli IAI1 chromosome, complete genomehypothetical protein4e-43173
NC_011415:2248417:224750822475082248428921Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-43173
NC_010498:1210145:122891112289111229831921Escherichia coli SMS-3-5, complete genomecarboxylate/amino acid/amine transporter4e-43173
CU928160:2091249:209124920912492092169921Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein4e-43173
NC_011740:1991941:199194119919411992861921Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative inner membrane protein6e-42169
NC_015761:1970042:197327419732741974194921Salmonella bongori NCTC 12419, complete genomehypothetical protein5e-42169
NC_004631:948054:988990988990989910921Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-41167
NC_016832:948029:986665986665987585921Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,putative inner membrane transporter yedA2e-41167
NC_016831:1865681:186568118656811866601921Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-41167
NC_016857:2027311:203053120305312031457927Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74inner membrane transporter yedA1e-41167
NC_017046:2026672:202989220298922030818927Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-41167
NC_011149:1110642:113139511313951132315921Salmonella enterica subsp. enterica serovar Agona str. SL483,carboxylate/amino acid/amine transporter1e-41167
NC_011205:1227373:124520912452091246129921Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-41167
NC_016810:2027311:203053720305372031457921Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-41167
NC_016856:2085283:208437420843742085294921Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-41167
NC_016863:2029340:203256620325662033486921Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-41167
NC_013716:2139952:214104121410412141961921Citrobacter rodentium ICC168, complete genomehypothetical protein2e-37154
AC_000091:2027648:203167620316762032596921Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein1e-35148
NC_010473:2119480:211857121185712119491921Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein1e-35148
NC_000913:2028472:202756320275632028483921Escherichia coli K12, complete genomepredicted inner membrane protein1e-35148
NC_009801:2159123:215912321591232160043921Escherichia coli E24377A, complete genomecarboxylate/amino acid/amine transporter1e-35148
NC_009800:2049346:204934620493462050266921Escherichia coli HS, complete genomecarboxylate/amino acid/amine transporter1e-35148
NC_012759:1920955:192004619200461920966921Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-35148
NC_012947:1769438:180687818068781807798921Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-35148
NC_013008:2561586:256067725606772561597921Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-35148
NC_016902:1902431:192390819239081924837930Escherichia coli KO11FL chromosome, complete genomecarboxylate/amino acid/amine transporter6e-35145
CP002185:2181936:218101821810182181947930Escherichia coli W, complete genomepredicted inner membrane protein6e-35145
CP002516:1902431:192390819239081924837930Escherichia coli KO11, complete genomecarboxylate/amino acid/amine transporter6e-35145
NC_011283:1901229:192033319203331921244912Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein4e-33139
NC_016612:5208936:521028652102865211197912Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative DMT superfamily transporter inner membrane protein6e-33139
NC_015663:4906652:490774749077474908658912Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative DMT superfamily transporter inner membrane protein2e-32137
NC_021066:601029:619153619153620064912Raoultella ornithinolytica B6, complete genomeDMT superfamily transporter inner membrane protein2e-27121
NC_014306:3006028:300739930073993008316918Erwinia billingiae Eb661, complete genomecarboxylate/amino acid/amine transporter2e-2097.8
NC_013132:3605317:360441936044193605336918Chitinophaga pinensis DSM 2588, complete genomeprotein of unknown function DUF6 transmembrane3e-1167
NC_014655:1098428:111623111162311117145915Leadbetterella byssophila DSM 17132 chromosome, complete genomehypothetical protein1e-0858.2
NC_015589:2447132:246711424671142468061948Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehypothetical protein9e-0855.5
NC_008314:1955793:196031119603111961213903Ralstonia eutropha H16 chromosome 2, complete sequenceTransmembrane protein1e-0755.1
NC_013947:1011899:1012447101244710140061560Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptide methionine sulfoxide reductase1e-0755.1
NC_015064:649201:652668652668653618951Acidobacterium sp. MP5ACTX9 chromosome, complete genomeprotein of unknown function DUF6 transmembrane4e-0650.1