Pre_GI: BLASTP Hits

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Query: NC_012125:2938519:2949986 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2949986, End: 2950228, Length: 243

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012214:2221702:225498622549862255159174Erwinia pyrifoliae Ep1/96, complete genomeCell invasion protein-cytoplasmic/type III secretion system needle protein4e-1270.1
NC_006905:2960260:296960229696022969844243Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein; cytoplasmic3e-40163
NC_002695:3702344:372028737202873720526240Escherichia coli O157:H7 str. Sakai, complete genomeEprI3e-23107
NC_010102:2967464:297905729790572979299243Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-39160
NC_016832:2829767:284124528412452841487243Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-37154
NC_010067:84093:981809818098419240Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-34144
NC_016856:3026426:303631230363123036554243Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex major subunit3e-40163
NC_016857:3028421:303865130386513038893243Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle complex major subunit3e-40163
NC_003197:3005842:301607530160753016317243Salmonella typhimurium LT2, complete genomeneedle complex major subunit3e-40163
NC_016863:2974333:298456529845652984807243Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex major subunit3e-40163
NC_011274:2881306:289153928915392891781243Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity 1 island effector protein3e-40163
NC_003198:2856596:286808928680892868331243Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity 1 island effector protein1e-37154
NC_011294:2890500:290073429007342900976243Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity 1 island effector protein3e-40163
NC_004631:2842453:285394628539462854188243Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity 1 island effector protein1e-37154
NC_015761:2726000:273630427363042736546243Salmonella bongori NCTC 12419, complete genomepathogenicity 1 island effector protein9e-34142
NC_016860:3029272:303950530395053039747243Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity 1 island effector protein3e-40163
NC_016831:2867766:287799828779982878240243Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity 1 island effector protein3e-40163
NC_006511:2819128:283062128306212830863243Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity 1 island effector protein1e-38158
NC_011147:2814664:282615728261572826399243Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein1e-38158
NC_013722:1689125:171186217118621712155294Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein1e-1375.5
NC_010694:2138000:216761821676182167824207Erwinia tasmaniensis, complete genomeType III secretion apparatus5e-1373.2
NC_009800:2995958:301696830169683017183216Escherichia coli HS, complete genometype III secretion apparatus needle protein2e-2097.8
NC_011094:2913500:292328129232812923523243Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus needle protein3e-40163
NC_011083:2980356:299058929905892990831243Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion apparatus needle protein3e-40163
NC_011205:3050235:306046630604663060708243Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus needle protein3e-40163
NC_011080:2982346:299257929925792992821243Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus needle protein3e-40163
NC_011149:2912219:292460329246032924845243Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus needle protein5e-37152
NC_011353:3805819:382468438246843824923240Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus needle protein3e-23107
NC_013008:3761467:377941037794103779649240Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype III secretion apparatus protein EprI3e-23107
NC_017046:3027161:303739130373913037633243Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system apparatus3e-40163
NC_016810:3028421:303865130386513038893243Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system apparatus3e-40163
NC_011751:3285646:330451233045123304751240Escherichia coli UMN026 chromosome, complete genometype III secretion system needle protein3e-23107
NC_010468:906957:921841921841922056216Escherichia coli ATCC 8739, complete genometype III secretion system needle protein2e-2097.8
NC_013971:1660144:167353316735331673805273Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system protein1e-1581.6
NC_013961:851044:860691860691860960270Erwinia amylovora, complete genomeType III secretion system protein PrgI2e-1994.4