Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4501098 Kineococcus radiotolerans SRS30216, complete genome

Start: 4501098, End: 4502078, Length: 981

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:2309615:232745723274572328410954Streptomyces fulvissimus DSM 40593, complete genomeShort chain dehydrogenase4e-93341
NC_014210:1625954:163991916399191640866948Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,short-chain dehydrogenase/reductase SDR5e-93341
NC_016887:4343830:434953643495364350498963Nocardia cyriacigeorgica GUH-2, complete genomeputative Short-chain dehydrogenase/reductase1e-87323
NC_003888:211748:223294223294224232939Streptomyces coelicolor A3(2), complete genomeshort chain dehydrogenase8e-73274
NC_004463:1369165:136828713682871369225939Bradyrhizobium japonicum USDA 110, complete genomedehydrogenase4e-46185
NC_010475:1563578:156504515650451565962918Synechococcus sp. PCC 7002, complete genomeoxidoreductase, short chain dehydrogenase/reductase family4e-37155
NC_007492:3180480:320861632086163209599984Pseudomonas fluorescens PfO-1, complete genomeShort-chain dehydrogenase/reductase SDR5e-34145
NC_015379:3570658:357604135760413576991951Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative short chain dehydrogenase3e-34145
NC_010515:2449143:246325224632522464157906Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceshort-chain dehydrogenase/reductase SDR8e-34144
NC_015703:4483500:451396545139654514888924Runella slithyformis DSM 19594 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-31136
NC_012808:3972983:399450239945023995422921Methylobacterium extorquens AM1, complete genomeShort-chain dehydrogenase/reductase SDR5e-31135
NC_010407:1114408:113309811330981134057960Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative oxidoreductase2e-29130
NC_015434:666692:697773697773698678906Verrucosispora maris AB-18-032 chromosome, complete genomeshort-chain dehydrogenase/reductase sdr8e-28124
NC_014210:5048502:506555750655575066495939Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,short-chain dehydrogenase/reductase SDR2e-25116
NC_016582:3763476:377629737762973777244948Streptomyces bingchenggensis BCW-1 chromosome, complete genomedehydrogenase6e-25115
NC_013406:3583474:359950735995073600415909Paenibacillus sp. Y412MC10 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-24113
NC_014318:6539137:654020665402066541066861Amycolatopsis mediterranei U32 chromosome, complete genomeshort-chain dehydrogenase2e-24113
NC_017186:6539181:654025065402506541098849Amycolatopsis mediterranei S699 chromosome, complete genomeshort-chain dehydrogenase3e-24112
NC_009380:3384737:339930533993053400222918Salinispora tropica CNB-440 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-23110
NC_015957:5225903:523357652335765234457882Streptomyces violaceusniger Tu 4113 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-23110
NC_003888:211748:228714228714229649936Streptomyces coelicolor A3(2), complete genomeoxidoreductase4e-23108
NC_003296:1419992:141999214199921420912921Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE OXIDOREDUCTASE PROTEIN4e-22105
NC_016609:701500:714889714889715845957Niastella koreensis GR20-10 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-21103
NC_009254:442360:455734455734456645912Burkholderia vietnamiensis G4 chromosome 3, complete sequenceshort-chain dehydrogenase/reductase SDR2e-21103
NC_005070:2308363:230913623091362310053918Synechococcus sp. WH 8102, complete genomeShort-chain dehydrogenase/reductase (SDR) superfamily8e-21101
NC_005071:523423:530611530611531513903Prochlorococcus marinus str. MIT 9313, complete genomeShort-chain dehydrogenase/reductase (SDR) superfamily7e-21101
NC_016114:7252500:727252672725267273431906Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR6e-1995.1
NC_015957:3282183:328377132837713284580810Streptomyces violaceusniger Tu 4113 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR4e-1789
NC_011146:3426500:342666934266693427586918Geobacter bemidjiensis Bem, complete genomeshort-chain dehydrogenase/reductase SDR7e-1684.7
NC_015167:1911758:191175819117581912702945Cellulophaga lytica DSM 7489 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR7e-1684.7
NC_013061:2055000:2056381205638120574001020Pedobacter heparinus DSM 2366, complete genomeshort-chain dehydrogenase/reductase SDR1e-1584.3
NC_012918:1444333:147487114748711475713843Geobacter sp. M21 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-1583.6
NC_013037:1072266:1078720107872010797451026Dyadobacter fermentans DSM 18053, complete genomeshort-chain dehydrogenase/reductase SDR3e-1582.8
NC_012489:3503632:350363235036323504630999Gemmatimonas aurantiaca T-27, complete genomeputative oxidoreductase1e-1480.5
NC_015381:2859000:2888692288869228897111020Burkholderia gladioli BSR3 chromosome 1, complete sequenceshort-chain dehydrogenase/reductase SDR6e-1375.1
NC_008595:1951887:195825319582531959074822Mycobacterium avium 104, complete genomeretinol dehydrogenase 122e-1273.6
NC_013235:682902:688792688792689772981Nakamurella multipartita DSM 44233, complete genomeshort-chain dehydrogenase/reductase SDR4e-1272.4
NC_011365:1171536:117581411758141176794981Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR5e-1272
NC_016948:2931285:295277429527742953595822Mycobacterium intracellulare MOTT-64 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-1067.8
NC_016947:1455744:146311314631131463934822Mycobacterium intracellulare MOTT-02 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR5e-1065.5
NC_015709:1769806:178661417866141787606993Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeshort-chain dehydrogenase/reductase SDR1e-0964.3
NC_013440:8405719:8405719840571984067411023Haliangium ochraceum DSM 14365, complete genomeshort-chain dehydrogenase/reductase SDR3e-0962.8
NC_010628:2418000:243025524302552431166912Nostoc punctiforme PCC 73102, complete genomeshort-chain dehydrogenase/reductase SDR1e-0860.8
NC_013595:4031947:403606740360674037023957Streptosporangium roseum DSM 43021, complete genomeoxidoreductase2e-0860.1
NC_009051:1118486:113313511331351133980846Methanoculleus marisnigri JR1, complete genomeshort-chain dehydrogenase/reductase SDR8e-0858.2
NC_014364:394899:400305400305401180876Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-0757.4
NC_013169:513327:533666533666534490825Kytococcus sedentarius DSM 20547, complete genomeshort-chain dehydrogenase of unknown substrate specificity5e-0755.5
NC_008595:2687245:270797627079762708665690Mycobacterium avium 104, complete genomeretinol dehydrogenase 122e-0653.5