Pre_GI: BLASTP Hits

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Query: NC_004741:2169877:2172965 Shigella flexneri 2a str. 2457T, complete genome

Start: 2172965, End: 2173795, Length: 831

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:2190635:219372321937232194571849Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-129461
CP002185:2347413:235450923545092355333825Escherichia coli W, complete genomemembrane protein conferring nickel and cobalt resistance7e-129459
NC_016822:2341127:234694923469492347773825Shigella sonnei 53G, complete genomenickel/cobalt efflux protein RcnA1e-128458
NC_011741:2239637:224545922454592246283825Escherichia coli IAI1 chromosome, complete genomenickel/cobalt efflux protein RcnA1e-128458
CU928160:2239637:224545922454592246283825Escherichia coli IAI1 chromosome, complete genomenickel and cobalt resistance1e-128458
NC_007384:2251792:225761422576142258438825Shigella sonnei Ss046, complete genomehypothetical protein1e-128458
NC_002695:2854629:286163228616322862471840Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-128457
NC_011745:2399313:240513524051352405959825Escherichia coli ED1a chromosome, complete genomenickel/cobalt efflux protein RcnA4e-128457
NC_010473:2267851:227494722749472275771825Escherichia coli str. K-12 substr. DH10B, complete genomemembrane protein conferring nickel and cobalt resistance4e-128457
NC_010468:1694729:170825617082561709080825Escherichia coli ATCC 8739, complete genomehigh-affinity nickel-transporter4e-128457
AC_000091:2185369:218925121892512190075825Escherichia coli W3110 DNA, complete genomemembrane protein conferring nickel and cobalt resistance4e-128457
NC_000913:2180855:218393921839392184763825Escherichia coli K12, complete genomemembrane protein conferring nickel and cobalt resistance4e-128457
NC_012759:2069326:207642220764222077246825Escherichia coli BW2952 chromosome, complete genomenickel/cobalt efflux protein RcnA4e-128457
NC_011750:955451:969567969567970364798Escherichia coli IAI39 chromosome, complete genomenickel/cobalt efflux protein RcnA8e-128456
NC_009800:2225182:222826622282662229090825Escherichia coli HS, complete genomenickel/cobalt efflux protein RcnA1e-127455
NC_002655:2925787:293185129318512932702852Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-127455
NC_011353:2852362:285842528584252859282858Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenickel/cobalt efflux protein RcnA3e-127454
NC_013008:2851342:285740628574062858263858Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenickel/cobalt efflux protein RcnA3e-127454
NC_003296:673790:6949466949466960791134Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-41170
NC_009256:1782000:1788196178819617893261131Burkholderia vietnamiensis G4 chromosome 1, complete sequencehigh-affinity nickel-transporter2e-40166
NC_009254:637952:6564086564086575381131Burkholderia vietnamiensis G4 chromosome 3, complete sequencehigh-affinity nickel-transporter2e-40166
NC_015379:2751342:2767828276782827689641137Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transporter, membrane protein2e-38159
NC_012559:2663747:2706220270622027073111092Laribacter hongkongensis HLHK9, complete genomeHistidine-rich glycoprotein3e-38159
NC_009439:2427120:2472394247239424735211128Pseudomonas mendocina ymp, complete genomehigh-affinity nickel-transporter2e-37155
NC_008254:611437:6166106166106178061197Mesorhizobium sp. BNC1, complete genomehigh-affinity nickel-transporter4e-36151