Pre_GI: BLASTP Hits

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Query: NC_004603:1961432:1970301 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1970301, End: 1970504, Length: 204

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016945:822229:827339827339827542204Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein1e-1272
NC_016446:522936:528046528046528249204Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehypothetical protein1e-1272
NC_012667:504534:518115518115518318204Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein1e-1272
NC_012583:861225:866338866338866541204Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein1e-1272
NC_012580:796387:801500801500801703204Vibrio cholerae M66-2 chromosome II, complete sequencehypothetical protein1e-1272
NC_009456:383819:397401397401397604204Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein1e-1272
NC_002506:822401:827514827514827717204Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein1e-1272
NC_008700:3514745:352651235265123526721210Shewanella amazonensis SB2B, complete genomeconserved hypothetical protein6e-0856.2