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Query: NC_004547:590844 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 590844, End: 611167, Length: 20324

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004547:63972663972666109921374Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-74287BLASTN svgBLASTP svg
NC_010465:4222586*4222586424312420539Yersinia pseudotuberculosis YPIII, complete genome4e-20107BLASTN svgBLASTP svg
NC_010159:74181974181976361621798Yersinia pestis Angola, complete genome4e-20107BLASTN svgBLASTP svg
NC_008149:3790897*3790897381416023264Yersinia pestis Nepal516, complete genome4e-20107BLASTN svgBLASTP svg
NC_006155:456000*45600047849522496Yersinia pseudotuberculosis IP 32953, complete genome4e-20107BLASTN svgBLASTP svg
NC_005810:515744*51574453809922356Yersinia pestis biovar Microtus str. 91001, complete genome4e-20107BLASTN svgBLASTP svg
NC_003198:43158074315807434427728471Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-1693.7BLASTN svgBLASTP svg
NC_004631:43004574300457432892728471Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-1693.7BLASTN svgBLASTP svg
NC_003197:44706834470683449915328471Salmonella typhimurium LT2, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006511:42254554225455425318227728Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-1385.7BLASTN svgBLASTP svg
NC_006905:44053014405301444609940799Salmonella enterica subsp. enterica serovar Choleraesuis str2e-1385.7BLASTN svgBLASTP svg
NC_010102:43965004396500442510928610Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-1385.7BLASTN svgBLASTP svg
NC_011080:44618514461851449032128471Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1385.7BLASTN svgBLASTP svg
NC_011083:44666344466634449511028477Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1385.7BLASTN svgBLASTP svg
NC_011149:43903154390315441878928475Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1385.7BLASTN svgBLASTP svg
NC_020181:3585898*3585898362589840001Enterobacter aerogenes EA1509E, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012912:4194821*4194821421439319573Dickeya zeae Ech1591, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_012880:4117376*4117376413569218317Dickeya dadantii Ech703, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010067:33103363310336336496054625Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete1e-0869.9BLASTN svgBLASTP svg
NC_021066:37694053769405379116821764Raoultella ornithinolytica B6, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014228:35053203505320352873223413Xenorhabdus nematophila ATCC 19061, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_012997:541648*54164856744125794Teredinibacter turnerae T7901, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014722:77148377148379485123369Burkholderia rhizoxinica HKI 454, complete genome9e-0660BLASTN svgBLASTP svg
NC_014722:193500*19350021504421545Burkholderia rhizoxinica HKI 454, complete genome9e-0660BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome9e-0660BLASTN svgBLASTP svg