Pre_GI: BLASTP Hits

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Query: NC_004129:5781413:5793181 Pseudomonas fluorescens Pf-5, complete genome

Start: 5793181, End: 5795199, Length: 2019

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009654:91096:1008841008841028631980Marinomonas sp. MWYL1, complete genomecytochrome o ubiquinol oxidase subunit I0915
NC_015497:3614817:3623817362381736258111995Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomecytochrome o ubiquinol oxidase, subunit I0913
NC_015663:2694373:2726307272630727282981992Enterobacter aerogenes KCTC 2190 chromosome, complete genomecytochrome o ubiquinol oxidase subunit I0895
NC_004741:366822:3814353814353834261992Shigella flexneri 2a str. 2457T, complete genome0893
NC_008258:401786:4198874198874219442058Shigella flexneri 5 str. 8401, complete genome0887
NC_012779:2127542:2139105213910521410961992Edwardsiella ictaluri 93-146, complete genomecytochrome o ubiquinol oxidase, subunit I, putative0883
NC_016632:1049510:1049510104951010515011992Serratia symbiotica str. 'Cinara cedri' chromosome, completecytochrome o ubiquinol oxidase subunit I0862
NC_010943:1379707:1394740139474013967432004Stenotrophomonas maltophilia K279a, complete genomeputative quinol oxidase subunit 10860
NC_020209:1986503:2022282202228220242551974Pseudomonas poae RE*1-1-14, complete genomecytochrome o ubiquinol oxidase subunit I0858
NC_007508:1446526:1465332146533214673322001Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecytochrome O ubiquinol oxidase subunit I0856
NC_017259:480656:4937054937054956961992Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,cytochrome O ubiquinol oxidase subunit I0822
NC_017256:515579:5155795155795175671989Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,cytochrome O ubiquinol oxidase subunit I0798
NC_017253:509494:5157045157045176921989Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,cytochrome O ubiquinol oxidase subunit I0795
NC_002528:505951:5148035148035167911989Buchnera aphidicola str. APS (Acyrthosiphon pisum), completecytochrome O ubiquinol oxidase subunit I0793
NC_004061:498483:5158885158885178671980Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomecytochrome O ubiquinol oxidase B0788
NC_015723:1047418:1048537104853710505402004Cupriavidus necator N-1 chromosome 2, complete sequenceubiquinol oxidase subunit 10775
NC_015675:4493758:4496918449691844989272010Mesorhizobium opportunistum WSM2075 chromosome, complete genomecytochrome o ubiquinol oxidase subunit I0754
NC_014910:2045088:2065096206509620671022007Alicycliphilus denitrificans BC chromosome, complete genomecytochrome o ubiquinol oxidase, subunit i0724
NC_015422:2326942:2348459234845923504652007Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome o ubiquinol oxidase subunit I0724
NC_018677:111500:1440151440151459641950Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, completeCytochrome O ubiquinol oxidase subunit I0709
NC_005956:152497:1644781644781664962019Bartonella henselae str. Houston-1, complete genomeCytochrome o ubiquinol oxidase subunit I0652
NC_005955:139907:1519021519021539202019Bartonella quintana str. Toulouse, complete genomeCytochrome o ubiquinol oxidase subunit I0649
NC_020300:131782:1440331440331460512019Bartonella australis Aust/NH1, complete genomecytochrome o ubiquinol oxidase subunit I0642
NC_015942:1047576:1054853105485310570002148Acidithiobacillus ferrivorans SS3 chromosome, complete genomecytochrome c oxidase subunit I1e-170600
NC_015850:2259769:2275149227514922772872139Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome O ubiquinol oxidase subunit I3e-170598
NC_015850:169180:1873441873441894912148Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome O ubiquinol oxidase subunit I6e-168591
NC_004461:746284:7462847462847482721989Staphylococcus epidermidis ATCC 12228, complete genomequinol oxidase polypeptide I QoxB3e-156552
NC_002976:638799:6387996387996407871989Staphylococcus epidermidis RP62A, complete genomequinol oxidase, subunit I3e-156552
NC_020164:1784223:1802612180261218046001989Staphylococcus warneri SG1, complete genomequinol oxidase subunit 12e-155550
NC_013205:526281:5684475684475704201974Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Cytochrome-c oxidase3e-151535
NC_017190:1465079:1523791152379115256591869Bacillus amyloliquefaciens LL3 chromosome, complete genomecytochrome caa3 oxidase (subunit I)7e-124444
NC_020181:2714559:2717680271768027187441065Enterobacter aerogenes EA1509E, complete genomeCytochrome O ubiquinol oxidase subunit I2e-123443
NC_009523:2769154:2790746279074627926711926Roseiflexus sp. RS-1 chromosome, complete genomecytochrome-c oxidase4e-110399
NC_012803:1302261:1318282131828213199371656Micrococcus luteus NCTC 2665, complete genomecytochrome c oxidase, subunit I4e-100365
NC_015514:2414617:2428515242851524303351821Cellulomonas fimi ATCC 484 chromosome, complete genomecytochrome c oxidase, subunit I5e-98359
NC_010617:1428902:1441721144172114434421722Kocuria rhizophila DC2201, complete genomecytochrome c oxidase subunit I2e-97357
NC_013510:1786194:1800674180067418023771704Thermomonospora curvata DSM 43183, complete genomecytochrome c oxidase, subunit I2e-97357
NC_014151:2312000:2323545232354523253681824Cellulomonas flavigena DSM 20109 chromosome, complete genomecytochrome c oxidase, subunit I4e-97356
NC_009664:3718927:3727172372717237289381767Kineococcus radiotolerans SRS30216, complete genomeCytochrome c oxidase subunit I type8e-97355
NC_015671:1540860:1548793154879315506101818Cellvibrio gilvus ATCC 13127 chromosome, complete genomecytochrome c oxidase subunit I7e-96352
NC_015588:1965787:1977325197732519791661842Isoptericola variabilis 225 chromosome, complete genomecytochrome c oxidase, subunit I5e-96352
NC_009659:3520093:3520850352085035224511602Janthinobacterium sp. Marseille chromosome, complete genomecytochrome c oxidase subunit I2e-95350
NC_013441:2788806:2800376280037628021601785Gordonia bronchialis DSM 43247, complete genomecytochrome c oxidase, subunit I1e-94347
NC_016943:4692561:4699665469966547014191755Blastococcus saxobsidens DD2, complete genomecytochrome c oxidase subunit 13e-94346
NC_014210:3763940:3767144376714437688201677Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,cytochrome c oxidase, subunit I5e-94345
NC_018750:2005229:2017884201788420195991716Streptomyces venezuelae ATCC 10712, complete genomeCytochrome c oxidase polypeptide I2e-93343
NC_015186:2884866:2893122289312228947351614Acidiphilium multivorum AIU301, complete genomecytochrome c oxidase subunit I5e-93342
NC_007626:2354260:2352665235266523542631599Magnetospirillum magneticum AMB-1, complete genomeHeme/copper-type cytochrome/quinol oxidase1e-92341
NC_015953:1756493:1765996176599617677321737Streptomyces sp. SirexAA-E chromosome, complete genomecytochrome c oxidase subunit I1e-92341
NC_014643:2056280:2144439214443921461421704Rothia dentocariosa ATCC 17931 chromosome, complete genomecytochrome c oxidase subunit I9e-93341
NC_007798:520109:5435525435525451111560Neorickettsia sennetsu str. Miyayama, complete genomecytochrome c oxidase, subunit I2e-92340
NC_017278:48630:5324753247556222376Thermus sp. CCB_US3_UF1 chromosome, complete genomeCytochrome c oxidase polypeptide I+III2e-92340
NC_013169:1661135:1670047167004716718581812Kytococcus sedentarius DSM 20547, complete genomecytochrome c oxidase, subunit I2e-92340
NC_006351:73000:99533995331011281596Burkholderia pseudomallei K96243 chromosome 2, complete sequencecytochrome C oxidase-related protein4e-92339
NC_003888:2305901:2316758231675823184941737Streptomyces coelicolor A3(2), complete genomecytochrome c oxidase subunit I4e-92339
NC_009075:92210:1189001189001204951596Burkholderia pseudomallei 668 chromosome II, complete sequencecytochrome c oxidase, subunit I3e-92339
NC_007435:1914375:1938073193807319396681596Burkholderia pseudomallei 1710b chromosome II, complete sequencecytochrome c oxidase polypeptide I3e-92339
NC_010572:6293417:6300884630088463026201737Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative cytochrome c oxidase subunit I3e-92339
NC_016932:1791868:1798330179833018000511722Corynebacterium pseudotuberculosis 316 chromosome, complete genomeCytochrome C oxidase polypeptide I5e-92338
NC_016626:1592781:1612397161239716144122016Burkholderia sp. YI23 plasmid byi_1p, complete sequencecytochrome c oxidase subunit I1e-91337
NC_009078:74954:99001990011005751575Burkholderia pseudomallei 1106a chromosome II, complete sequencecytochrome c oxidase, subunit I2e-91337
NC_007508:4593446:4593600459360045952041605Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecytochrome c oxidase, subunit I4e-91336
NC_021177:1922930:1935446193544619371821737Streptomyces fulvissimus DSM 40593, complete genomeCytochrome c oxidase subunit I4e-91336
NC_003919:4568892:4569046456904645706501605Xanthomonas axonopodis pv. citri str. 306, complete genomecytochrome C oxidase subunit I3e-91336
NC_006370:166000:1721371721371738011665Photobacterium profundum SS9 chromosome 1, complete sequenceputative cytochrome c oxidase, subunit I5e-91335
NC_007947:1556437:1557045155704515589401896Methylobacillus flagellatus KT, complete genomeCytochrome-c oxidase1e-89331
NC_008726:3915979:3938593393859339403381746Mycobacterium vanbaalenii PYR-1, complete genomeCytochrome-c oxidase2e-89330
NC_014012:207289:2246392246392262341596Shewanella violacea DSS12, complete genomecytochrome c oxidase, subunit I4e-89329
NC_014315:3278386:3287128328712832887261599Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase subunit I1e-88328
NC_008752:3902637:3930298393029839320071710Acidovorax avenae subsp. citrulli AAC00-1, complete genomeCytochrome-c oxidase3e-88326
NC_005125:760721:7916257916257932891665Gloeobacter violaceus PCC 7421, complete genomecytochrome c oxidase subunit I5e-88325
NC_016830:81382:99479994791010651587Pseudomonas fluorescens F113 chromosome, complete genomeprotein CoxA5e-88325
NC_015730:1107840:1107840110784011095101671Roseobacter litoralis Och 149 chromosome, complete genomecytochrome c oxidase subunit 15e-88325
NC_007484:3429140:3440857344085734424551599Nitrosococcus oceani ATCC 19707, complete genomeCytochrome c oxidase1e-87324
NC_015379:89441:1139901139901155821593Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative cytochrome-c oxidase, subunit I2e-87324
NC_002977:925588:9267429267429283671626Methylococcus capsulatus str. Bath, complete genomecytochrome c oxidase, subunit I5e-87322
NC_010172:57500:99011990111009271917Methylobacterium extorquens PA1, complete genomecytochrome c oxidase, subunit I2e-86320
NC_004757:1089057:1102158110215811037351578Nitrosomonas europaea ATCC 19718, complete genomeCytochrome c oxidase, subunit I3e-86320
NC_015731:402280:4116314116314132171587Nitrosomonas sp. Is79A3 chromosome, complete genomecytochrome c oxidase subunit I3e-85316
NC_012791:721813:7549587549587569461989Variovorax paradoxus S110 chromosome 1, complete genomecytochrome c oxidase, subunit I8e-85315
NC_015387:1965711:1970351197035119727352385Marinithermus hydrothermalis DSM 14884 chromosome, complete genomecytochrome c oxidase, subunit I4e-84313
NC_010175:2925084:2926080292608029277381659Chloroflexus aurantiacus J-10-fl, complete genomecytochrome c oxidase, subunit I4e-83309
NC_011884:1029328:1047387104738710491501764Cyanothece sp. PCC 7425, complete genomecytochrome c oxidase, subunit I8e-83308
NC_013894:1380564:1406760140676014083791620Thermocrinis albus DSM 14484 chromosome, complete genomeCytochrome-c oxidase2e-82307
NC_009465:29735:3556335563371641602Candidatus Vesicomyosocius okutanii HA, complete genomecytochrome c oxidase subunit I3e-82306
NC_007484:1355880:1364437136443713660441608Nitrosococcus oceani ATCC 19707, complete genomeCytochrome c oxidase1e-80301
NC_015594:579354:5930365930365948831848Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completecytochrome c oxidase subunit I3e-79296
NC_014315:1169910:1198142119814211997491608Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase subunit I3e-79296
NC_007484:1975322:1986593198659319891542562Nitrosococcus oceani ATCC 19707, complete genomeCytochrome c oxidase3e-79296
NC_013960:2662458:2685228268522826868321605Nitrosococcus halophilus Nc4 chromosome, complete genomecytochrome c oxidase, subunit I8e-77288
NC_008571:185000:2034852034852053081824Gramella forsetii KT0803, complete genomecytochrome c oxidase subunit I2e-76287
NC_015167:2068607:2089431208943120912361806Cellulophaga lytica DSM 7489 chromosome, complete genomecytochrome c oxidase subunit I3e-76286
NC_008312:409830:4282934282934299811689Trichodesmium erythraeum IMS101, complete genomeCytochrome-c oxidase6e-76285
NC_014315:1463383:1471239147123914738002562Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c oxidase subunit I5e-76285
NC_010547:31444:5220552205539291725Cyanothece sp. ATCC 51142 chromosome linear, complete sequencecytochrome c oxidase subunit I1e-75284
NC_010511:4313769:4343199434319943449681770Methylobacterium sp. 4-46 chromosome, complete genomecytochrome c oxidase subunit I1e-74281
NC_009956:88354:1138011138011163622562Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequencecytochrome c oxidase subunit I type1e-74281
NC_018645:1798874:1798874179887418005021629Desulfobacula toluolica Tol2, complete genomecytochrome c oxidase subunit I CtaD3e-74280
NC_020054:1335699:1345346134534613472321887Fibrella aestuarina BUZ 2 drat genomeCytochrome-c oxidase2e-73277
NC_015914:2658845:2668167266816726700591893Cyclobacterium marinum DSM 745 chromosome, complete genomecytochrome c oxidase subunit I2e-73277
NC_013730:6901725:6910170691017069120531884Spirosoma linguale DSM 74, complete genomeCytochrome-c oxidase4e-73276
NC_016001:364666:3865283865283883241797Flavobacterium branchiophilum, complete genomecytochrome c oxidase subunit I3e-73276
NC_014041:595464:6144846144846163041821Zunongwangia profunda SM-A87 chromosome, complete genomecytochrome c oxidase subunit I9e-73275
NC_014655:2366201:2390772239077223926341863Leadbetterella byssophila DSM 17132 chromosome, complete genomecytochrome c oxidase subunit i1e-72275
NC_015387:1965711:1974426197442619761741749Marinithermus hydrothermalis DSM 14884 chromosome, complete genomecytochrome c oxidase, subunit I2e-72274
NC_015703:3444025:3452488345248834543681881Runella slithyformis DSM 19594 chromosome, complete genomecytochrome c oxidase subunit I1e-71271
NC_020181:2714559:271876127187612719471711Enterobacter aerogenes EA1509E, complete genomeCytochrome O ubiquinol oxidase subunit I3e-69263
NC_014831:1906691:1925694192569419275741881Thermaerobacter marianensis DSM 12885 chromosome, complete genomeCytochrome-c oxidase2e-68261
NC_014472:941453:9440999440999459251827Flavobacteriales bacterium HTCC2170 chromosome, complete genomeprobable cytochrome c oxidase polypeptide i (cytochrome bb3 subunit 1) oxidoreductase protein1e-68261
NC_013922:230842:2565412565412590242484Natrialba magadii ATCC 43099 chromosome, complete genomecytochrome c oxidase subunit I7e-64245
NC_013743:1937125:1951098195109819533772280Haloterrigena turkmenica DSM 5511, complete genomeCytochrome-c oxidase1e-63244
NC_006396:2057209:2057209205720920597732565Haloarcula marismortui ATCC 43049 chromosome I, complete sequencecytochrome c oxidase subunit I4e-63243
NC_011761:2785660:2830602283060228324851884Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completecytochrome c oxidase, aa3-type, subunit I6e-63242
NC_011206:2685499:2730441273044127323241884Acidithiobacillus ferrooxidans ATCC 53993, complete genomeCytochrome-c oxidase6e-63242
NC_019962:2189432:2192293219229321945752283Natrinema pellirubrum DSM 15624, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 17e-63242
NC_015942:1824847:1852003185200318538861884Acidithiobacillus ferrivorans SS3 chromosome, complete genomecytochrome c oxidase subunit I2e-59231
NC_019974:1909244:1935497193549719379712475Natronococcus occultus SP4, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 11e-59231
NC_019964:1961237:1975947197594719786402694Halovivax ruber XH-70, complete genomeheme/copper-type cytochrome/quinol oxidase, subunit 13e-59230
NC_013124:1784117:1793314179331417952631950Acidimicrobium ferrooxidans DSM 10331, complete genomeCytochrome-c oxidase1e-57224
NC_002754:2391867:2415240241524024167751536Sulfolobus solfataricus P2, complete genomeQuinol oxidase (SoxABC), cytochrome aa3 subunit (soxB)5e-1273.6
NC_007181:55685:7293572935747011767Sulfolobus acidocaldarius DSM 639, complete genomecytochrome c oxidase polypeptide I1e-0862.4
NC_014831:285759:2988612988613005131653Thermaerobacter marianensis DSM 12885 chromosome, complete genomecytochrome c oxidase subunit I6e-0859.7
NC_003106:2060628:2061779206177920635601782Sulfolobus tokodaii str. 7, complete genomehypothetical cytochrome c oxidase polypeptide I3e-0757.8
NC_014118:1559770:1558149155814915597831635Burkholderia sp. CCGE1002 chromosome chromosome 2, completecytochrome c oxidase subunit I3e-0757.4