Pre_GI: BLASTP Hits

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Query: NC_003366:1091766:1098691 Clostridium perfringens str. 13, complete genome

Start: 1098691, End: 1100124, Length: 1434

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:1048515:1055449105544910568821434Clostridium perfringens ATCC 13124, complete genomeethanolamine utilization protein EutA0917
NC_017179:2067015:2073732207373220751651434Clostridium difficile BI1, complete genomereactivating factor for ethanolamine ammonia lyase0704
NC_013315:2059007:2065724206572420671571434Clostridium difficile CD196 chromosome, complete genomereactivating factor for ethanolamine ammonia lyase0704
NC_015275:4493500:4503909450390945053541446Clostridium lentocellum DSM 5427 chromosome, complete genomeEthanolamine utilization EutA0678
NC_004557:2289135:2303249230324923046821434Clostridium tetani E88, complete genomeethanolamine utilization protein eutA2e-154545
NC_009633:286677:2933982933982948311434Alkaliphilus metalliredigens QYMF chromosome, complete genomereactivating factor for ethanolamine ammonia lyase8e-145513
NC_009922:868262:8725718725718740011431Alkaliphilus oremlandii OhILAs, complete genomeEthanolamine utilisation EutA2e-142506
NC_014376:1586649:1594319159431915957491431Clostridium saccharolyticum WM1 chromosome, complete genomeEthanolamine utilization EutA3e-139495
NC_014654:2277461:2291988229198822934151428Halanaerobium sp. 'sapolanicus' chromosome, complete genomeEthanolamine utilization EutA2e-134479
NC_013517:1055854:1133363113336311347901428Sebaldella termitidis ATCC 33386, complete genomeEthanolamine utilisation EutA2e-128459
NC_013192:63111:7270572705741351431Leptotrichia buccalis DSM 1135, complete genomeEthanolamine utilisation EutA9e-127454
NC_014614:284005:2922572922572937021446Clostridium sticklandii, complete genomereactivating factor for ethanolamine ammonia lyase2e-118426
NC_016584:1714507:1728934172893417303911458Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein2e-99363
NC_018515:1663912:1683089168308916845461458Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeethanolamine utilization protein1e-96353
NC_009253:1381401:1388978138897813904471470Desulfotomaculum reducens MI-1 chromosome, complete genomereactivating factor for ethanolamine ammonia lyase9e-96350
NC_014019:3543389:3557182355718235586271446Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine utilization protein EutA5e-94345
NC_016584:1998000:2022445202244520238541410Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein7e-85314
NC_018870:705900:7221167221167235551440Thermacetogenium phaeum DSM 12270 chromosome, complete genomeethanolamine utilization protein EutA2e-82306
NC_012491:5914500:5931927593192759333871461Brevibacillus brevis NBRC 100599, complete genomehypothetical protein1e-79297
NC_010468:1343228:1345855134585513472581404Escherichia coli ATCC 8739, complete genomeEthanolamine utilisation EutA2e-66253
NC_004741:2526421:2539758253975825408431086Shigella flexneri 2a str. 2457T, complete genome2e-42173
NC_017328:2586171:2599264259926426006371374Shigella flexneri 2002017 chromosome, complete genomeEthanolamine utilization protein EutA3e-42173
NC_008258:2542863:2557439255743925588121374Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-42173
NC_004337:2548288:2561625256162525629981374Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-42173
NC_004129:6240904:6242210624221062436461437Pseudomonas fluorescens Pf-5, complete genomeethanolamine utilization protein EutA5e-32139