Pre_GI: BLASTN Hits

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Query: NC_013716:1618249 Citrobacter rodentium ICC168, complete genome

Start: 1618249, End: 1643078, Length: 24830

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
CP002516:23616282361628238443522808Escherichia coli KO11, complete genome0761BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome0706BLASTN svgBLASTP svg
CP002797:15910001591000160930018301Escherichia coli NA114, complete genome0690BLASTN svgBLASTP svg
NC_003198:14632531463253148503221780Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-156559BLASTN svgBLASTP svg
NC_009792:14797791479779150315123373Citrobacter koseri ATCC BAA-895, complete genome5e-153549BLASTN svgBLASTP svg
NC_020063:22300002230000227048640487Enterobacteriaceae bacterium strain FGI 57, complete genome4e-67264BLASTN svgBLASTP svg
NC_021066:1393750*1393750141908425335Raoultella ornithinolytica B6, complete genome3e-55224BLASTN svgBLASTP svg
NC_012917:23627252362725238725724533Pectobacterium carotovorum subsp. carotovorum PC1, complete genome5e-45190BLASTN svgBLASTP svg
NC_014838:58958158958161723827658Pantoea sp. At-9b plasmid pPAT9B01, complete sequence6e-26127BLASTN svgBLASTP svg
NC_007613:15330241533024155939726374Shigella boydii Sb227, complete genome2e-19105BLASTN svgBLASTP svg
NC_008258:17509641750964177411123148Shigella flexneri 5 str. 8401, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-1487.7BLASTN svgBLASTP svg
NC_012912:24265202426520244512618607Dickeya zeae Ech1591, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_020064:29603322960332298749027159Serratia marcescens FGI94, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_010162:3177324*3177324319730419981Sorangium cellulosum 'So ce 56', complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015224:24735822473582249262519044Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,8e-1073.8BLASTN svgBLASTP svg
NC_014562:2871765*2871765290090029136Pantoea vagans C9-1 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010725:39619813961981398401922039Methylobacterium populi BJ001, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_000913:1188999*1188999122144532447Escherichia coli K12, complete genome1e-0869.9BLASTN svgBLASTP svg
CU928160:1232510*1232510125609923590Escherichia coli IAI1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
CU928145:1300863*1300863132330622444Escherichia coli 55989 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
CP002516:2786000*2786000281204426045Escherichia coli KO11, complete genome1e-0869.9BLASTN svgBLASTP svg
CP002185:1298675*1298675132326124587Escherichia coli W, complete genome1e-0869.9BLASTN svgBLASTP svg
AP010958:1339263*1339263136273323471Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0869.9BLASTN svgBLASTP svg
AC_000091:1191353*1191353122209930747Escherichia coli W3110 DNA, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008253:12284851228485125292524441Escherichia coli 536, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009800:1254409*1254409127914624738Escherichia coli HS, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013421:57961579617736519405Pectobacterium wasabiae WPP163, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011748:1300863*1300863132330622444Escherichia coli 55989, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010658:1193225*1193225121671123487Shigella boydii CDC 3083-94, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010498:1995500*1995500202472729228Escherichia coli SMS-3-5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010473:1245284*1245284127191826635Escherichia coli str. K-12 substr. DH10B, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010468:2699000*2699000272285223853Escherichia coli ATCC 8739, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009801:1296488*1296488132313526648Escherichia coli E24377A, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012912:29985112998511302450925999Dickeya zeae Ech1591, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009049:11256811125681116136535685Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence5e-0867.9BLASTN svgBLASTP svg
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009800:15890001589000161490825909Escherichia coli HS, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003197:1611302*1611302163313721836Salmonella typhimurium LT2, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008027:29090002909000292988020881Pseudomonas entomophila L48, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015277:325207*32520734606120855Sphingobacterium sp. 21 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020181:13442591344259136282518567Enterobacter aerogenes EA1509E, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015711:23752623752626475927234Myxococcus fulvus HW-1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010505:1205747*1205747122904923303Methylobacterium radiotolerans JCM 2831, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009074:14706891470689150586435176Burkholderia pseudomallei 668 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_007434:1809946*1809946187124661301Burkholderia pseudomallei 1710b chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg