Pre_GI: BLASTN Hits

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Query: NC_013198:394000 Lactobacillus rhamnosus GG, complete genome

Start: 394000, End: 467958, Length: 73959

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013198:51179551179553527023476Lactobacillus rhamnosus GG, complete genome03136BLASTN svgBLASTP svg
NC_013198:1538792*1538792157448935698Lactobacillus rhamnosus GG, complete genome03130BLASTN svgBLASTP svg
NC_013198:2088780*2088780211935230573Lactobacillus rhamnosus GG, complete genome03021BLASTN svgBLASTP svg
NC_013198:1030970*1030970105037019401Lactobacillus rhamnosus GG, complete genome03019BLASTN svgBLASTP svg
NC_008526:56590256590259093225031Lactobacillus casei ATCC 334, complete genome02450BLASTN svgBLASTP svg
NC_010999:62348962348964609722609Lactobacillus casei, complete genome02442BLASTN svgBLASTP svg
NC_008525:56100056100058709926100Pediococcus pentosaceus ATCC 25745, complete genome02440BLASTN svgBLASTP svg
NC_008526:23731902373190239665623467Lactobacillus casei ATCC 334, complete genome02303BLASTN svgBLASTP svg
NC_008526:19735001973500199344619947Lactobacillus casei ATCC 334, complete genome02282BLASTN svgBLASTP svg
NC_008526:74500*7450011650442005Lactobacillus casei ATCC 334, complete genome02268BLASTN svgBLASTP svg
NC_010610:755000*75500078559930600Lactobacillus fermentum IFO 3956, complete genome02250BLASTN svgBLASTP svg
NC_008526:50626350626352818721925Lactobacillus casei ATCC 334, complete genome02250BLASTN svgBLASTP svg
NC_014334:19543331954333198420029868Lactobacillus casei str. Zhang chromosome, complete genome01943BLASTN svgBLASTP svg
NC_014334:36997436997439377323800Lactobacillus casei str. Zhang chromosome, complete genome01881BLASTN svgBLASTP svg
NC_014334:49330849330851458821281Lactobacillus casei str. Zhang chromosome, complete genome01879BLASTN svgBLASTP svg
NC_014334:58952658952661259823073Lactobacillus casei str. Zhang chromosome, complete genome01877BLASTN svgBLASTP svg
NC_008526:34344534344536727223828Lactobacillus casei ATCC 334, complete genome01865BLASTN svgBLASTP svg
NC_010610:17650001765000179344828449Lactobacillus fermentum IFO 3956, complete genome01824BLASTN svgBLASTP svg
NC_013199:392450*39245041971327264Lactobacillus rhamnosus Lc 705, complete genome01758BLASTN svgBLASTP svg
NC_010999:20597382059738208224722510Lactobacillus casei, complete genome01616BLASTN svgBLASTP svg
NC_010999:34925234925236774518494Lactobacillus casei, complete genome0718BLASTN svgBLASTP svg
NC_010610:20136592013659205177738119Lactobacillus fermentum IFO 3956, complete genome4e-1489.7BLASTN svgBLASTP svg
NC_010999:21557142155714218202826315Lactobacillus casei, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_010610:79597579597582885432880Lactobacillus fermentum IFO 3956, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_008528:33126033126035463323374Oenococcus oeni PSU-1, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_014334:26960002696000271820622207Lactobacillus casei str. Zhang chromosome, complete genome6e-1075.8BLASTN svgBLASTP svg
NC_014727:20363402036340205433517996Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,2e-0973.8BLASTN svgBLASTP svg
NC_015428:21724217244030818585Lactobacillus buchneri NRRL B-30929 chromosome, complete genome9e-0971.9BLASTN svgBLASTP svg
NC_010999:1381497*1381497140718925693Lactobacillus casei, complete genome4e-0869.9BLASTN svgBLASTP svg
NC_010610:11784301178430122897750548Lactobacillus fermentum IFO 3956, complete genome4e-0869.9BLASTN svgBLASTP svg
NC_018528:19320001932000197009938100Lactobacillus helveticus R0052 chromosome, complete genome6e-0765.9BLASTN svgBLASTP svg
NC_015602:19496101949610197209922490Lactobacillus kefiranofaciens ZW3 chromosome, complete genome6e-0765.9BLASTN svgBLASTP svg
NC_007760:53582553582555927723453Anaeromyxobacter dehalogenans 2CP-C, complete genome9e-0661.9BLASTN svgBLASTP svg