Pre_GI: BLASTN Hits

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Query: NC_010673:703816 Borrelia hermsii DAH, complete genome

Start: 703816, End: 757324, Length: 53509

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008710:703740*70374075456050821Borrelia turicatae 91E135, complete genome07384BLASTN svgBLASTP svg
NC_006156:685344*68534470851723174Borrelia garinii PBi chromosome linear, complete sequence3e-153551BLASTN svgBLASTP svg
NC_014963:2972358*2972358299391521558Terriglobus saanensis SP1PR4 chromosome, complete genome7e-18101BLASTN svgBLASTP svg
NC_012483:848750*84875087237623627Acidobacterium capsulatum ATCC 51196, complete genome7e-18101BLASTN svgBLASTP svg
NC_003030:3251941*3251941329013838198Clostridium acetobutylicum ATCC 824, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_015687:3252233*3252233329176539533Clostridium acetobutylicum DSM 1731 chromosome, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_021182:4557608*4557608459730239695Clostridium pasteurianum BC1, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_018677:111500*11150014809936600Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, complete2e-1593.7BLASTN svgBLASTP svg
NC_016012:1380260*1380260140143821179Candidatus Arthromitus sp. SFB-rat-Yit, complete genome7e-1591.7BLASTN svgBLASTP svg
NC_009465:90000*9000013018540186Candidatus Vesicomyosocius okutanii HA, complete genome7e-1591.7BLASTN svgBLASTP svg
NC_008787:437786*43778645759919814Campylobacter jejuni subsp. jejuni 81-176, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_009012:3204696*3204696322373319038Clostridium thermocellum ATCC 27405, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_014802:441000*44100045999318994Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete1e-1387.7BLASTN svgBLASTP svg
NC_019892:2058000*2058000208052422525Singulisphaera acidiphila DSM 18658 chromosome, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_018644:910000*91000093169821699Alpha proteobacterium HIMB59 chromosome, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_014758:1546898*1546898157379926902Calditerrivibrio nitroreducens DSM 19672 chromosome, complete4e-1385.7BLASTN svgBLASTP svg
NC_014209:2257316*2257316228561028295Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,2e-1283.8BLASTN svgBLASTP svg
NC_004344:26828*268286612639299Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,7e-1281.8BLASTN svgBLASTP svg
NC_014751:225477*22547724539519919Mycoplasma leachii PG50 chromosome, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_018643:673195*67319570659933405Alpha proteobacterium HIMB5 chromosome, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_005364:17709117709119836621276Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_006142:140853*14085318445043598Rickettsia typhi str. Wilmington, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_012563:3956500*3956500399649139992Clostridium botulinum A2 str. Kyoto, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_013416:1429881*1429881145213822258Aggregatibacter actinomycetemcomitans D11S-1, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_015635:3542125*3542125356795325829Microlunatus phosphovorus NM-1, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_015913:1491393*1491393153098039588Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_013921:23759002375900240259926700Thermoanaerobacter italicus Ab9 chromosome, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_004432:32500*325005784225343Mycoplasma penetrans HF-2, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_019978:178277*17827721455436278Halobacteroides halobius DSM 5150, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_010544:850502*85050287932828827Candidatus Phytoplasma australiense, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_009850:1011293*1011293103921027918Arcobacter butzleri RM4018, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_012039:412837*41283745648543649Campylobacter lari RM2100, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_002696:2829002*2829002285565626655Caulobacter crescentus CB15, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_002696:3759551*3759551378932829778Caulobacter crescentus CB15, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_006831:250074*25007428496034887Ehrlichia ruminantium str. Gardel, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_006832:252952*25295228640633455Ehrlichia ruminantium str. Welgevonden, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_007940:1235250*1235250125869223443Rickettsia bellii RML369-C, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_008593:196257*19625723516638910Clostridium novyi NT, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_009883:277409*27740930010322695Rickettsia bellii OSU 85-389, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_010516:3759136*3759136379956240427Clostridium botulinum B1 str. Okra, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_010520:3788702*3788702382916340462Clostridium botulinum A3 str. Loch Maree, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_014100:1144463*1144463117100626544Caulobacter segnis ATCC 21756 chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_014100:172452*17245219647824027Caulobacter segnis ATCC 21756 chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_005295:272708*27270830641333706Ehrlichia ruminantium str. Welgevonden, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_007354:233991*23399125671722727Ehrlichia canis str. Jake, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_010334:15616911561691159069529005Shewanella halifaxensis HAW-EB4, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_015682:736746*73674676603529290Thermodesulfobacterium sp. OPB45 chromosome, complete genome1e-0767.9BLASTN svgBLASTP svg
NS_000191:120700*12070014754826849Uncultured Termite group 1 bacterium phylotype Rs-D17, complete1e-0767.9BLASTN svgBLASTP svg
NC_014614:1090000*1090000111373723738Clostridium sticklandii, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_002927:5327094*5327094535399926906Bordetella bronchiseptica RB50, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_007205:1059684*1059684108783428151Candidatus Pelagibacter ubique HTCC1062, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_008783:671349*67134969609924751Bartonella bacilliformis KC583, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_009879:141000*14100016835327354Rickettsia canadensis str. McKiel, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_010161:1598000*1598000161754119542Bartonella tribocorum CIP 105476, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_010645:3720501*3720501374549924999Bordetella avium 197N, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_010794:654748*65474867451419767Methylacidiphilum infernorum V4, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_011653:1226035*1226035125859932565Thermosipho africanus TCF52B, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_013316:81969*8196911125629288Clostridium difficile R20291, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_015913:10823231082323110268920367Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_019814:125611*12561117345647846Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas4e-0765.9BLASTN svgBLASTP svg
NC_020299:764526*76452681749952974Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete4e-0765.9BLASTN svgBLASTP svg
NC_019907:467377*46737748686719491Liberibacter crescens BT-1 chromosome, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_010939:1633000*1633000166140328404Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete2e-0663.9BLASTN svgBLASTP svg
NC_010718:193231*19323123794944719Natranaerobius thermophilus JW/NM-WN-LF, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_009053:1668500*1668500169468326184Actinobacillus pleuropneumoniae L20, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_007799:968499*96849998704218544Ehrlichia chaffeensis str. Arkansas, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_004545:15650*156506959953950Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome2e-0663.9BLASTN svgBLASTP svg
NC_000963:141500*14150016904927550Rickettsia prowazekii str. Madrid E, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_012985:123500*12350014685123352Candidatus Liberibacter asiaticus str. psy62, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_013515:183088*18308823894555858Streptobacillus moniliformis DSM 12112, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_013849:93391393391395777423862Ferroglobus placidus DSM 10642 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_020054:1666263*1666263169726331001Fibrella aestuarina BUZ 2 drat genome2e-0663.9BLASTN svgBLASTP svg
NC_015638:2045500*2045500206559920100Lacinutrix sp. 5H-3-7-4 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_015555:327562*32756238328255721Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete2e-0663.9BLASTN svgBLASTP svg
NC_015167:569569*56956959872729159Cellulophaga lytica DSM 7489 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_014909:619407*61940765312133715Candidatus Blochmannia vafer str. BVAF chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_013921:1977444*1977444203224454801Thermoanaerobacter italicus Ab9 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_013407:1478811*1478811149759918789Methanocaldococcus vulcanius M7, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_010338:4015928*4015928404982733900Caulobacter sp. K31, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_009465:171000*17100019666925670Candidatus Vesicomyosocius okutanii HA, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_008820:2595500*2595500261863823139Prochlorococcus marinus str. MIT 9303, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_007716:467235*46723550266435430Aster yellows witches'-broom phytoplasma AYWB, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_007716:266500*26650029609929600Aster yellows witches'-broom phytoplasma AYWB, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_005303:553500*55350057580722308Onion yellows phytoplasma OY-M, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_013525:1953920*1953920197655522636Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_014330:1113145*1113145114959936455Brachyspira pilosicoli 95/1000 chromosome, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_014829:133305*13330517500741703Bacillus cellulosilyticus DSM 2522 chromosome, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_014964:388458*38845844542856971Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete6e-0661.9BLASTN svgBLASTP svg
NC_015958:2251619*2251619232072969111Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_018607:290500*29050033195841459Brachyspira pilosicoli B2904 chromosome, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_018750:4311300*4311300432914617847Streptomyces venezuelae ATCC 10712, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_020064:1150982*1150982117040619425Serratia marcescens FGI94, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_020409:32991532991534841618502Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete6e-0661.9BLASTN svgBLASTP svg
NC_019908:2068631*2068631210767339043Brachyspira pilosicoli P43/6/78 chromosome, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_005303:272915*27291531815445240Onion yellows phytoplasma OY-M, complete genome6e-0661.9BLASTN svgBLASTP svg