Query: NC_010407:2406113 Clavibacter michiganensis subsp. sepedonicus chromosome, complete
Start: 2406113, End: 2424999, Length: 18887
Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010407:410918 | 410918 | 435272 | 24355 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 2131 | BLASTN svg | BLASTP svg |
NC_010407:32960* | 32960 | 51633 | 18674 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 2107 | BLASTN svg | BLASTP svg |
NC_010399:13222 | 13222 | 35599 | 22378 | Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, complete | 0 | 2107 | BLASTN svg | BLASTP svg |
NC_010407:151599* | 151599 | 175589 | 23991 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 2089 | BLASTN svg | BLASTP svg |
NC_010407:3174470 | 3174470 | 3197545 | 23076 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 2081 | BLASTN svg | BLASTP svg |
NC_010407:2038499 | 2038499 | 2056747 | 18249 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 2070 | BLASTN svg | BLASTP svg |
NC_010407:3132683 | 3132683 | 3154890 | 22208 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 1485 | BLASTN svg | BLASTP svg |
NC_015514:477935 | 477935 | 500795 | 22861 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_015514:181773 | 181773 | 205349 | 23577 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_018750:1835500 | 1835500 | 1857719 | 22220 | Streptomyces venezuelae ATCC 10712, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_021177:1736854 | 1736854 | 1776599 | 39746 | Streptomyces fulvissimus DSM 40593, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_015677:3685452 | 3685452 | 3709037 | 23586 | Ramlibacter tataouinensis TTB310 chromosome, complete genome | 2e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_015125:3284095 | 3284095 | 3308099 | 24005 | Microbacterium testaceum StLB037, complete genome | 9e-12 | 79.8 | BLASTN svg | BLASTP svg |
NC_010572:6463939* | 6463939 | 6494688 | 30750 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 9e-12 | 79.8 | BLASTN svg | BLASTP svg |
NC_010407:1114408 | 1114408 | 1138946 | 24539 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_003155:7453994 | 7453994 | 7481642 | 27649 | Streptomyces avermitilis MA-4680, complete genome | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_003888:4031299 | 4031299 | 4054099 | 22801 | Streptomyces coelicolor A3(2), complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_013595:3541012* | 3541012 | 3562099 | 21088 | Streptosporangium roseum DSM 43021, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_013235:593289* | 593289 | 615847 | 22559 | Nakamurella multipartita DSM 44233, complete genome | 9e-09 | 69.9 | BLASTN svg | BLASTP svg |
NC_014391:4644500 | 4644500 | 4669830 | 25331 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010557:207846 | 207846 | 228516 | 20671 | Burkholderia ambifaria MC40-6 chromosome 3, complete sequence | 1e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_003888:1751179 | 1751179 | 1771550 | 20372 | Streptomyces coelicolor A3(2), complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |