Pre_GI: BLASTN Hits

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Query: NC_008262:2150944 Clostridium perfringens SM101, complete genome

Start: 2150944, End: 2169099, Length: 18156

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008261:2481500*2481500250521723718Clostridium perfringens ATCC 13124, complete genome05186BLASTN svgBLASTP svg
NC_003366:22667572266757228574918993Clostridium perfringens str. 13, complete genome05154BLASTN svgBLASTP svg
NC_021182:48824944882494490859926106Clostridium pasteurianum BC1, complete genome2e-40174BLASTN svgBLASTP svg
NC_021182:2059143*2059143208239023248Clostridium pasteurianum BC1, complete genome7e-31143BLASTN svgBLASTP svg
NC_016012:236012*23601227777541764Candidatus Arthromitus sp. SFB-rat-Yit, complete genome4e-23117BLASTN svgBLASTP svg
NC_008261:81729581729584209724803Clostridium perfringens ATCC 13124, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_003366:10137731013773103624122469Clostridium perfringens str. 13, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008261:2614817*2614817263341718601Clostridium perfringens ATCC 13124, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_015690:632565*63256567426641702Paenibacillus mucilaginosus KNP414 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008262:67711*677119109923389Clostridium perfringens SM101, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008262:297960*29796032314425185Clostridium perfringens SM101, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008262:24980002498000252144223443Clostridium perfringens SM101, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008261:27439422743942276681822877Clostridium perfringens ATCC 13124, complete genome8e-0660BLASTN svgBLASTP svg
NC_003454:1346500*1346500136586219363Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete8e-0660BLASTN svgBLASTP svg