Pre_GI: BLASTN Hits

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Query: NC_001263:662666 Deinococcus radiodurans R1 chromosome 1, complete sequence

Start: 662666, End: 689956, Length: 27291

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_001263:13786051378605140253323929Deinococcus radiodurans R1 chromosome 1, complete sequence03451BLASTN svgBLASTP svg
NC_015161:523278*52327854807924802Deinococcus proteolyticus MRP chromosome, complete genome01667BLASTN svgBLASTP svg
NC_015422:28068322806832284558938758Alicycliphilus denitrificans K601 chromosome, complete genome8e-47196BLASTN svgBLASTP svg
NC_011146:22001422200142224285442713Geobacter bemidjiensis Bem, complete genome3e-31145BLASTN svgBLASTP svg
NC_021150:4311902*4311902433613524234Azotobacter vinelandii CA6, complete genome4e-30141BLASTN svgBLASTP svg
NC_012560:4311906*4311906433613924234Azotobacter vinelandii DJ, complete genome4e-30141BLASTN svgBLASTP svg
NC_020126:58494835849483587209922617Myxococcus stipitatus DSM 14675, complete genome2e-29139BLASTN svgBLASTP svg
NC_013169:12900001290000131283622837Kytococcus sedentarius DSM 20547, complete genome3e-28135BLASTN svgBLASTP svg
NC_011004:4947980*4947980497058322604Rhodopseudomonas palustris TIE-1, complete genome4e-27131BLASTN svgBLASTP svg
NC_005296:45742134574213461698142769Rhodopseudomonas palustris CGA009, complete genome7e-26127BLASTN svgBLASTP svg
NC_014972:10351241035124106227327150Desulfobulbus propionicus DSM 2032 chromosome, complete genome2e-23119BLASTN svgBLASTP svg
NC_010524:3094303*3094303311453120229Leptothrix cholodnii SP-6, complete genome2e-22115BLASTN svgBLASTP svg
CU928145:11394*113943596224569Escherichia coli 55989 chromosome, complete genome6e-20107BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome6e-20107BLASTN svgBLASTP svg
NC_009800:12162*121623729725136Escherichia coli HS, complete genome6e-20107BLASTN svgBLASTP svg
NC_011748:11394*113943596224569Escherichia coli 55989, complete genome6e-20107BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome6e-20107BLASTN svgBLASTP svg
NC_011751:12000*120003835526356Escherichia coli UMN026 chromosome, complete genome6e-20107BLASTN svgBLASTP svg
NC_004129:957890*95789098009922210Pseudomonas fluorescens Pf-5, complete genome2e-19105BLASTN svgBLASTP svg
NC_020181:3585898*3585898362589840001Enterobacter aerogenes EA1509E, complete genome9e-19103BLASTN svgBLASTP svg
NC_011992:1505106*1505106152858323478Acidovorax ebreus TPSY, complete genome9e-19103BLASTN svgBLASTP svg
NC_007643:4294818*4294818431506320246Rhodospirillum rubrum ATCC 11170, complete genome9e-19103BLASTN svgBLASTP svg
NC_001263:243000*24300026750924510Deinococcus radiodurans R1 chromosome 1, complete sequence4e-18101BLASTN svgBLASTP svg
CP002185:11921*119213722925309Escherichia coli W, complete genome1e-1799.6BLASTN svgBLASTP svg
CU928160:11381*113813595024570Escherichia coli IAI1 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_007947:79745679745682317625721Methylobacillus flagellatus KT, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_012526:2317862*2317862233754219681Deinococcus deserti VCD115, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_001263:132288*13228815896226675Deinococcus radiodurans R1 chromosome 1, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_015942:10475761047576107197424399Acidithiobacillus ferrivorans SS3 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015389:2030154*2030154207584945696Coriobacterium glomerans PW2 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013510:2521186*2521186254753326348Thermomonospora curvata DSM 43183, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015588:1463628*1463628149116227535Isoptericola variabilis 225 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014836:155924*15592417823722314Desulfurispirillum indicum S5 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013642:32379932379934694523147Thermotoga naphthophila RKU-10, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_000853:56957656957659272823153Thermotoga maritima MSB8, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008767:613394*61339463989326500Neisseria meningitidis FAM18, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010120:609323*60932363703227710Neisseria meningitidis 053442, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014931:1642179*1642179167070028522Variovorax paradoxus EPS chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014216:1061265*1061265108505223788Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_006177:52005552005554053820484Symbiobacterium thermophilum IAM 14863, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_002939:17383317383319586722035Geobacter sulfurreducens PCA, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_002505:2537655*2537655256310125447Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete5e-0867.9BLASTN svgBLASTP svg
NC_003551:1650476*1650476167652626051Methanopyrus kandleri AV19, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008278:50538995053899508662732729Frankia alni ACN14a, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010483:36352536352538629422770Thermotoga sp. RQ2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011830:4234392*4234392427059936208Desulfitobacterium hafniense DCB-2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014532:11087511087513531724443Halomonas elongata DSM 2581, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011770:45421834542183456916026978Pseudomonas aeruginosa LESB58, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008463:43421194342119436920327085Pseudomonas aeruginosa UCBPP-PA14, complete genome3e-0661.9BLASTN svgBLASTP svg