Pre_GI: BLASTP Hits

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Query: NC_017328:3935185:3938326 Shigella flexneri 2002017 chromosome, complete genome

Start: 3938326, End: 3939282, Length: 957

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:3453683:3479461347946134833603900Escherichia coli UMN026 chromosome, complete genomeSerine protease0640
NC_004431:3409389:3456362345636234602613900Escherichia coli CFT073, complete genomeAecreted auto transpoter toxin0640
NC_004337:3590323:391266739126673913173507Shigella flexneri 2a str. 301, complete genomeputative secreted autotransporter toxin8e-95347
CU928145:4792703:4796367479636748002243858Escherichia coli 55989 chromosome, complete genomeSerine protease pet precursor (Plasmid-encoded toxin pet)1e-63243
NC_004741:3041294:3052614305261430564713858Shigella flexneri 2a str. 2457T, complete genomeserine protease1e-63243
NC_004337:3049118:3060438306043830642953858Shigella flexneri 2a str. 301, complete genomeserine protease1e-63243
NC_011748:4792703:4796367479636748002243858Escherichia coli 55989, complete genomeSerine protease pet precursor (Plasmid-encoded toxin pet)1e-63243
NC_017328:3088907:3100227310022731040843858Shigella flexneri 2002017 chromosome, complete genomeSerine protease1e-63243
NC_007384:3383983:3389961338996133938183858Shigella sonnei Ss046, complete genomeserine protease9e-64243
NC_016822:3420826:3430127343012734339843858Shigella sonnei 53G, complete genomeserine protease9e-64243
NC_013717:5726:2232822328262543927Citrobacter rodentium ICC168 plasmid pCROD1, complete sequenceputative serine protease autotransporter1e-50200
CP002797:4411763:4418382441838244221463765Escherichia coli NA114, complete genomePer-activated serine protease autotransporter enterotoxin EspC5e-50198
NC_011601:2998326:3005494300549430094113918Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeserine protease5e-46184
NC_011745:3443371:3450022345002234519051884Escherichia coli ED1a chromosome, complete genome2e-38160
NC_013353:3853082:3873591387359138776824092Escherichia coli O103:H2 str. 12009, complete genomesecreted autotransporter serine protease3e-36152
AP010958:3853082:3873591387359138776824092Escherichia coli O103:H2 str. 12009 DNA, complete genomesecreted autotransporter serine protease3e-36152
NC_004337:3049118:3067738306773830709503213Shigella flexneri 2a str. 301, complete genomeserine protease precurser1e-34147
NC_004741:3041294:3059914305991430631263213Shigella flexneri 2a str. 2457T, complete genomeserine protease precurser1e-34147
NC_011748:3360967:3360967336096733650854119Escherichia coli 55989, complete genomeSerine protease pic precursor (ShMu)2e-34146
CU928145:3360967:3360967336096733650854119Escherichia coli 55989 chromosome, complete genomeSerine protease pic precursor (ShMu)2e-34146
NC_017328:3088907:3107526310752631116444119Shigella flexneri 2002017 chromosome, complete genomeSerine protease pic precursor2e-34146
NC_011742:291237:2967172967173008474131Escherichia coli S88 chromosome, complete genomeVacuolating autotransporter toxin5e-33141
NC_004431:364000:3718773718773760074131Escherichia coli CFT073, complete genomeHaemoglobin protease5e-33141
NC_004431:324000:3262093262093303244116Escherichia coli CFT073, complete genomePic serine protease precursor1e-32140
NC_008253:334467:3640503640503681804131Escherichia coli 536, complete genomeSepA7e-32138
NC_009790:42112:4930649306534064101Escherichia coli E24377A plasmid pETEC_74, complete sequencesecreted serine peptidase EatA4e-30132
NC_013716:4306695:4356883435688343607313849Citrobacter rodentium ICC168, complete genomeputative adhesin autotransporter7e-26118
NC_010067:1655815:1669131166913116732854155Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-25115
NC_015761:1181186:1200390120039012045444155Salmonella bongori NCTC 12419, complete genomehemoglobin protease9e-24110
CP002797:4411763:4425162442516244290943933Escherichia coli NA114, complete genomehypothetical protein1e-1687.4
NC_010498:3988351:3993788399378839975973810Escherichia coli SMS-3-5, complete genomeouter membrane autotransporter8e-1168.2
NC_013508:3188978:3206465320646532099893525Edwardsiella tarda EIB202, complete genometemperature sensitive hemagglutinin2e-0653.5