Pre_GI: BLASTP Hits

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Query: NC_017179:2067015:2088011 Clostridium difficile BI1, complete genome

Start: 2088011, End: 2089549, Length: 1539

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:2059007:2079988207998820815411554Clostridium difficile CD196 chromosome, complete genomeaminobenzoyl-glutamate transport protein0936
NC_010723:3395187:3399311339931134008461536Clostridium botulinum E3 str. Alaska E43, complete genomeaminobenzoyl-glutamate transport protein4e-88325
NC_010674:3581044:3584936358493635864711536Clostridium botulinum B str. Eklund 17B, complete genomeaminobenzoyl-glutamate transport protein6e-88325
NC_003366:64908:9393693936954921557Clostridium perfringens str. 13, complete genomehypothetical protein4e-84312
NC_020210:3341976:3374607337460733761331527Geobacillus sp. GHH01, complete genomeaminobenzoyl-glutamate transport protein1e-81304
NC_006370:847204:8665668665668681251560Photobacterium profundum SS9 chromosome 1, complete sequenceputative p-aminobenzoyl-glutamatetransporter2e-79296
NC_014377:1871333:1872632187263218741761545Thermosediminibacter oceani DSM 16646 chromosome, complete genomeAbgT putative transporter2e-78293
NC_018868:2458122:2460475246047524620311557Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genometransporter AbgT8e-78291
NC_009092:4337617:4354255435425543558681614Shewanella loihica PV-4, complete genomeAbgT putative transporter1e-76287
NC_013740:15401:3250732507340511545Acidaminococcus fermentans DSM 20731, complete genomeAbgT putative transporter1e-74281
NC_009328:3322802:3347144334714433485381395Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeaminobenzoyl-glutamate transporter3e-69263
NC_009446:174951:2137372137372152901554Dichelobacter nodosus VCS1703A, complete genomeAbgT transporter family protein4e-67256
NC_007164:547654:5512935512935529181626Corynebacterium jeikeium K411, complete genomeputative aminobenzoyl-glutamate transporter1e-65251
NC_010465:804249:8234828234828250381557Yersinia pseudotuberculosis YPIII, complete genomeAbgT putative transporter2e-63243
NC_017168:4509918:4520377452037745219331557Yersinia pestis A1122 chromosome, complete genomeputative integral membrane efflux protein5e-63242
NC_017154:848500:8643158643158658711557Yersinia pestis D106004 chromosome, complete genomeputative integral membrane efflux protein5e-63242
NC_008150:3711953:3729947372994737315031557Yersinia pestis Antiqua, complete genomeputative integral membrane efflux protein5e-63242
NC_008149:3648139:3663954366395436655101557Yersinia pestis Nepal516, complete genomeintegral membrane efflux protein5e-63242
NC_010545:1729161:1754022175402217555961575Corynebacterium urealyticum DSM 7109, complete genomeputative aminobenzoyl-glutamate transporter3e-57223
NC_015275:3243689:3259387325938732609431557Clostridium lentocellum DSM 5427 chromosome, complete genomeAbgT transporter4e-49196