Pre_GI: BLASTP Hits

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Query: NC_017179:1683199:1700527 Clostridium difficile BI1, complete genome

Start: 1700527, End: 1701006, Length: 480

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:1679000:169251216925121692991480Clostridium difficile CD196 chromosome, complete genomehypothetical protein2e-77287
NC_010723:915697:920387920387920896510Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein1e-36151
NC_010001:3614314:363920136392013639698498Clostridium phytofermentans ISDg, complete genomehypothetical protein4e-23107
NC_010001:986500:100821210082121008709498Clostridium phytofermentans ISDg, complete genomehypothetical protein3e-21100
NC_012563:2680246:268138726813872681866480Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein8e-1992.8
NC_009253:2819000:283577528357752836296522Desulfotomaculum reducens MI-1 chromosome, complete genomehypothetical protein7e-1579.7
NC_009253:1265474:127831912783191278855537Desulfotomaculum reducens MI-1 chromosome, complete genomehypothetical protein1e-1479
NC_015275:986382:987572987572988036465Clostridium lentocellum DSM 5427 chromosome, complete genomehypothetical protein2e-1167.8
NC_021182:554000:570188570188570736549Clostridium pasteurianum BC1, complete genomehypothetical protein6e-1063.2
NC_017297:2531750:255314525531452553696552Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein9e-1062.8
NC_009699:2552195:255300525530052553556552Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein9e-1062.8
NC_015275:911999:927979927979928527549Clostridium lentocellum DSM 5427 chromosome, complete genomeSigma-70 region 4 type 21e-0962
NC_021182:2536000:255209525520952552643549Clostridium pasteurianum BC1, complete genomehypothetical protein8e-0959.7