Pre_GI: BLASTP Hits

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Query: NC_015848:1708176:1712112 Mycobacterium canettii CIPT 140010059, complete genome

Start: 1712112, End: 1713401, Length: 1290

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016804:1679357:1683293168329316845821290Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative esterase0858
NC_012943:2707677:2724236272423627255251290Mycobacterium tuberculosis KZN 1435 chromosome, complete genomeesterase lipL0858
NC_008769:1709078:1713014171301417143031290Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative esterase lipL0858
NC_002945:1680751:1684687168468716859761290Mycobacterium bovis AF2122/97, complete genomeesterase LipL0858
NC_012207:1681971:1685907168590716871961290Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative esterase0858
NC_000962:1684005:1687941168794116892301290Mycobacterium tuberculosis H37Rv, complete genomePROBABLE ESTERASE LIPL0858
NC_009525:1685522:1689458168945816907471290Mycobacterium tuberculosis H37Ra, complete genomeputative esterase LipL0858
NC_009565:1688642:1692581169258116938671287Mycobacterium tuberculosis F11, complete genomeesterase lipL0857
NC_002755:1684161:1688100168810016893861287Mycobacterium tuberculosis CDC1551, complete genomeesterase0857
NC_016768:2704350:2720909272090927221951287Mycobacterium tuberculosis KZN 4207 chromosome, complete genomeesterase lipL0857
NC_019950:1689910:1691283169128316925721290Mycobacterium canettii CIPT 140060008 complete genomeEsterase LipL0852
NC_002944:1285436:1288815128881512901011287Mycobacterium avium subsp. paratuberculosis K-10, complete genomeLipL0669
NC_014168:2820315:2838663283866328399131251Segniliparus rotundus DSM 44985 chromosome, complete genomebeta-lactamase8e-96350
NC_013441:27877:5859358593597441152Gordonia bronchialis DSM 43247, complete genomebeta-lactamase8e-43174
NC_018750:3249756:3271989327198932731881200Streptomyces venezuelae ATCC 10712, complete genomeEsterase A7e-40165
NC_013929:5927935:5929399592939959305771179Streptomyces scabiei 87.22 chromosome, complete genomeserine hydrolase5e-36152
NC_018681:3541484:3544501354450135457541254Nocardia brasiliensis ATCC 700358 chromosome, complete genomebeta-lactamase1e-35150
NC_018868:4174794:4176330417633041775201191Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomebeta-lactamase5e-35149
NC_002947:1268089:1291208129120812923531146Pseudomonas putida KT2440, complete genomecarboxylesterase1e-34148
NC_011832:820658:8947328947328959551224Candidatus Methanosphaerula palustris E1-9c, complete genomebeta-lactamase2e-34146
NC_015976:2187377:2209234220923422104451212Sphingobium sp. SYK-6, complete genomeputative hydrolase2e-32140
NC_018681:867230:8987678987679000621296Nocardia brasiliensis ATCC 700358 chromosome, complete genomebeta-lactamase1e-29130
NC_013929:2583849:259361925936192594044426Streptomyces scabiei 87.22 chromosome, complete genomeesterase/lipase6e-1995.9
NC_006361:498305:5124605124605136321173Nocardia farcinica IFM 10152, complete genomeputative esterase2e-1893.6
NC_015976:2187377:2205961220596122071061146Sphingobium sp. SYK-6, complete genomeputative hydrolase1e-1067.8
NC_011206:1792621:1811382181138218127401359Acidithiobacillus ferrooxidans ATCC 53993, complete genomebeta-lactamase8e-1065.5
NC_011761:1904637:1925808192580819270941287Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completebeta-lactamase9e-1065.1
NC_008228:2295841:2305171230517123062801110Pseudoalteromonas atlantica T6c, complete genomebeta-lactamase1e-0861.6
NC_004193:701622:7038557038557053391485Oceanobacillus iheyensis HTE831, complete genomebeta-lactamase2e-0757.4
NC_017271:64293:8081080810822041395Xanthomonas campestris pv. raphani 756C chromosome, completebeta-lactamase6e-0755.8
NC_014931:3642779:3648036364803636497391704Variovorax paradoxus EPS chromosome, complete genomebeta-lactamase1e-0654.7