Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:2295841 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
229584122969051065conserved hypothetical Mrp protein ATPases involved in chromosome partitioningQuickGO ontologyBLASTP
22970112297610600deoxycytidine triphosphate deaminaseQuickGO ontologyBLASTP
22977082298658951transcriptional regulator AraC familyQuickGO ontologyBLASTP
22987732299240468YHSQuickGO ontologyBLASTP
2299796229987277tRNA-ProQuickGO ontology
23007302301173444hypothetical proteinBLASTP
230217623042422067AgaraseQuickGO ontologyBLASTP
230517123062801110beta-lactamaseQuickGO ontologyBLASTP
23073062307635330Thioredoxin domainQuickGO ontologyBLASTP
230770023090311332hypothetical proteinBLASTP
23091532309944792transcriptional regulator AraC familyQuickGO ontologyBLASTP
231018523114891305major facilitator superfamily MFS_1QuickGO ontologyBLASTP
231176723131431377aldehyde dehydrogenaseQuickGO ontologyBLASTP
231335123159422592peptidase M1 membrane alanine aminopeptidaseQuickGO ontologyBLASTP
231617923178281650AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
23179062318673768short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP