Pre_GI: BLASTP Hits

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Query: NC_014323:3976351:4020266 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Start: 4020266, End: 4021225, Length: 960

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008254:3980327:399500239950023995925924Mesorhizobium sp. BNC1, complete genometranscriptional regulator, RpiR family1e-24113
NC_010505:5035668:504276550427655043655891Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, RpiR family2e-23110
NC_015376:2241000:224701822470182247878861Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator, RpiR family1e-21103
NC_014323:3976351:403028740302874031168882Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein2e-21103
NC_015389:616430:639327639327640196870Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family4e-21102
NC_011985:61003:972699726998153885Agrobacterium radiobacter K84 chromosome 1, complete genometranscriptional regulator protein3e-2099.4
NC_015675:6493444:650704465070446507949906Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRpiR family transcriptional regulator3e-2099.4
NC_014923:5940500:595237359523735953278906Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completesugar isomerase (SIS)3e-2099.4
NC_019973:5869500:588133358813335882238906Mesorhizobium australicum WSM2073, complete genometranscriptional regulator3e-2099.4
NC_009079:1492664:151177715117771512637861Burkholderia mallei NCTC 10247 chromosome I, complete sequencephosphosugar-binding transcriptional regulator, RpiR family3e-2099.4
NC_008800:4389687:438968743896874390520834Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein6e-2098.6
NC_011745:291422:310012310012310845834Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator5e-1995.5
NC_014640:6745873:679667267966726797544873Achromobacter xylosoxidans A8 chromosome, complete genomeRpiR family transcriptional regulator8e-1994.7
NC_008358:2257787:227156122715612272391831Hyphomonas neptunium ATCC 15444, complete genomeSIS domain protein2e-1686.7
NC_012724:2443500:244352924435292444449921Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, RpiR family protein2e-1686.7
NC_014657:1193985:119567511956751196538864Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, rpir family3e-1582.8
NC_016630:1385719:139135113913511392217867Filifactor alocis ATCC 35896 chromosome, complete genometranscriptional regulator1e-1377.4
NC_017154:3094000:311353131135313114385855Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-1273.2
NC_003143:2895617:289561728956172896471855Yersinia pestis CO92, complete genomehypothetical protein3e-1273.2
NC_004088:1291754:129175412917541292608855Yersinia pestis KIM, complete genomehypothetical protein3e-1273.2
NC_008149:1221637:122163712216371222491855Yersinia pestis Nepal516, complete genomehypothetical protein3e-1273.2
NC_015634:2933712:295589529558952956770876Bacillus coagulans 2-6 chromosome, complete genomeRpiR family transcriptional regulator2e-1170.1
NC_014039:1766049:177515917751591776049891Propionibacterium acnes SK137 chromosome, complete genometranscriptional regulator, RpiR family3e-1066.2
NC_004129:2440744:245737724573772458264888Pseudomonas fluorescens Pf-5, complete genomeSIS domain protein1e-0964.3
NC_011958:1031592:106964510696451070505861Rhodobacter sphaeroides KD131 chromosome 2, complete genomeTranscriptional regulator, RpiR family1e-0963.9
NC_016516:1751336:176410717641071764895789Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeRpiR family transcriptional regulator2e-0963.2
NC_011661:1807101:181101118110111811856846Dictyoglomus turgidum DSM 6724, complete genometranscriptional regulator, RpiR family4e-0859.3
NC_008752:2056547:207339120733912074260870Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, RpiR family3e-0756.2
NC_014377:321949:336280336280337122843Thermosediminibacter oceani DSM 16646 chromosome, complete genometranscriptional regulator, RpiR family7e-0651.6
NC_005139:2201820:227140422714042272330927Vibrio vulnificus YJ016 chromosome I, complete sequencetranscriptional regulator8e-0651.6