Pre_GI: BLASTP Hits

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Query: NC_013410:2519441:2519441 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2519441, End: 2522014, Length: 2574

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015388:2499187:2514908251490825174242517Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeProtein of unknown function DUF23442e-139496
NC_016584:5388500:5397821539782153996771857Desulfosporosinus orientis DSM 765 chromosome, complete genomeradical SAM family protein3e-133476
NC_009633:2350892:2367780236778023696211842Alkaliphilus metalliredigens QYMF chromosome, complete genomeradical SAM domain-containing protein2e-132473
NC_018515:4334240:4362407436240743642631857Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeradical SAM family protein9e-131468
NC_020291:5752099:5752099575209957539551857Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeradical SAM domain-containing methylthiotransferase6e-127455
NC_000853:771746:7968027968027986011800Thermotoga maritima MSB8, complete genomehypothetical protein6e-124445
NC_013642:545464:5705055705055723041800Thermotoga naphthophila RKU-10, complete genomeRadical SAM domain protein1e-122441
NC_021182:2160580:2178683217868321805301848Clostridium pasteurianum BC1, complete genomeradical SAM family uncharacterized protein2e-121437
NC_014328:794000:8117008117008135531854Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Fe-S oxidoreductase1e-120434
NC_009699:3217315:3225444322544432272941851Clostridium botulinum F str. Langeland chromosome, complete genomeradical SAM domain-containing protein6e-120432
NC_015949:2002752:2015568201556820174091842Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeRadical SAM domain-containing protein2e-118427
NC_009698:3046833:3054951305495130568011851Clostridium botulinum A str. Hall chromosome, complete genomeradical SAM domain-containing protein2e-118427
NC_010516:3234791:3242920324292032447701851Clostridium botulinum B1 str. Okra, complete genomeradical SAM domain protein3e-118426
NC_014836:2325559:2326425232642523289412517Desulfurispirillum indicum S5 chromosome, complete genomehypothetical protein1e-117424
NC_012563:3416509:3421403342140334232531851Clostridium botulinum A2 str. Kyoto, complete genomeradical SAM domain protein5e-117422
NC_014652:666227:6737466737466755871842Caldicellulosiruptor hydrothermalis 108 chromosome, completeradical sam domain protein1e-116421
NC_003888:2814360:2827396282739628293811986Streptomyces coelicolor A3(2), complete genomehypothetical protein7e-114412
NC_011769:247202:2691932691932718862694Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeBeta tubulin, autoregulation binding site2e-112407
NC_016111:1766010:1826272182627218282271956Streptomyces cattleya NRRL 8057, complete genomehypothetical protein6e-112405
NC_014248:685656:7070677070677097632697Nostoc azollae 0708 chromosome, complete genomehypothetical protein1e-107391
NC_010475:2537500:2548021254802125506302610Synechococcus sp. PCC 7002, complete genomeFe-S oxidoreductases family 2 protein (adical SAM domain protein)5e-105382
NC_011883:1182000:1198486119848612012542769Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,Radical SAM domain protein5e-103376
NC_009616:183772:1904731904731922481776Thermosipho melanesiensis BI429 chromosome, complete genomeradical SAM domain-containing protein9e-95348
NC_014484:1163576:1180122118012211826682547Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein7e-88325
NC_013520:1638000:1651468165146816531951728Veillonella parvula DSM 2008, complete genomeRadical SAM domain protein1e-79298
NC_015577:1974821:1988700198870019909882289Treponema azotonutricium ZAS-9 chromosome, complete genomeradical SAM domain-containing protein1e-77291
NC_007681:600187:6046606046606061831524Methanosphaera stadtmanae DSM 3091, complete genomepredicted Fe-S oxidoreductase1e-52208
NC_005042:1719055:1729704172970417312571554Prochlorococcus marinus subsp. marinus str. CCMP1375, completeSAM radical enzyme3e-49197
NC_015636:1603664:1619527161952716208341308Methanothermococcus okinawensis IH1 chromosome, complete genomeRadical SAM domain-containing protein1e-45185
NC_014844:3015738:3019417301941730210871671Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeRadical SAM domain-containing protein2e-45184
NC_015320:1260344:1276341127634112777891449Archaeoglobus veneficus SNP6 chromosome, complete genomeRadical SAM domain-containing protein1e-42175
NC_013407:1177731:1181454118145411828331380Methanocaldococcus vulcanius M7, complete genomeRadical SAM domain protein3e-39164
NC_008095:1697157:1711943171194317134871545Myxococcus xanthus DK 1622, complete genomeradical SAM domain protein5e-39163
NC_020126:1830147:1842953184295318444971545Myxococcus stipitatus DSM 14675, complete genomeradical SAM domain-containing protein1e-36155
NC_015711:346436:3487123487123502561545Myxococcus fulvus HW-1 chromosome, complete genomeradical SAM domain-containing protein4e-36154
NC_009033:1283645:1298584129858413001461563Staphylothermus marinus F1, complete genomeRadical SAM domain protein8e-34146
NC_009376:1291901:1293927129392712953571431Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeradical SAM domain-containing protein9e-28126
NC_016148:1021138:1043770104377010452571488Thermovirga lienii DSM 17291 chromosome, complete genomeradical SAM protein4e-22107
NC_015953:3313000:3315108331510833169131806Streptomyces sp. SirexAA-E chromosome, complete genomeRadical SAM domain-containing protein1e-1689
NC_014658:743453:7607717607717620601290Methanothermus fervidus DSM 2088 chromosome, complete genomeradical sam domain protein5e-1067
NC_014652:666227:675574675574676209636Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein6e-0860.1
NC_015949:2002752:201494620149462015581636Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomehypothetical protein7e-0756.6