Pre_GI: BLASTP Hits

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Query: NC_013410:155236:164326 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 164326, End: 165222, Length: 897

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018721:297906:319023319023319925903Psychroflexus torquis ATCC 700755 chromosome, complete genomeCRISPR-associated protein Cas1, type II8e-85313
NC_015311:2689118:270179527017952702472678Prevotella denticola F0289 chromosome, complete genome2e-52206
NC_017501:1913360:192038819203881921302915Neisseria meningitidis 8013, complete genomehypothetical protein1e-37157
NC_013016:354000:368567368567369481915Neisseria meningitidis alpha14 chromosome, complete genomeputative DNA-repair protein1e-37157
NC_010644:254725:264709264709265605897Elusimicrobium minutum Pei191, complete genomeCRISPR-associated Cas1 family protein6e-35147
NC_017517:1915842:192286819228681923782915Neisseria meningitidis M01-240355 chromosome, complete genomeCRISPR-associated protein Cas16e-34144
NC_010376:49185:779647796478836873Finegoldia magna ATCC 29328, complete genomehypothetical protein1e-33143
NC_009952:366959:395098395098396009912Dinoroseobacter shibae DFL 12, complete genomeCRISPR-associated protein Cas13e-33142
NC_008578:2206500:221048322104832211370888Acidothermus cellulolyticus 11B, complete genomeCRISPR-associated protein Cas16e-31134
NC_016801:36000:395673956740481915Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeCRISPR-associated protein1e-30134
NC_016790:31240:380533805338967915Corynebacterium diphtheriae VA01 chromosome, complete genomeCRISPR-associated protein1e-30134
NC_015389:2030154:204023520402352041113879Coriobacterium glomerans PW2 chromosome, complete genomeCRISPR-associated protein Cas12e-30133
NC_017221:441948:451447451447452352906Bifidobacterium longum subsp. longum KACC 91563 chromosome,hypothetical protein1e-29130
NC_014363:1396912:140690914069091407787879Olsenella uli DSM 7084 chromosome, complete genomeCRISPR-associated protein Cas18e-29127
NC_014616:213118:229724229724230614891Bifidobacterium bifidum S17 chromosome, complete genomeCRISPR-associated protein7e-29127
NC_013714:1376500:139965213996521400569918Bifidobacterium dentium Bd1, complete genomeCRISPR-associated protein Cas12e-28126
NC_015433:1315363:132279113227911323705915Streptococcus suis ST3 chromosome, complete genomeCRISPR-associated protein Cas13e-27122
NC_015738:2652500:268355726835572684435879Eggerthella sp. YY7918, complete genomehypothetical protein2e-26119
NC_004070:747146:747146747146748015870Streptococcus pyogenes MGAS315, complete genomehypothetical protein6e-26118
NC_004606:1107500:114874111487411149610870Streptococcus pyogenes SSI-1, complete genomehypothetical protein6e-26118
NC_009785:1414892:142565514256551426578924Streptococcus gordonii str. Challis substr. CH1, complete genomeCRISPR-associated protein Cas12e-25116
NC_016077:998741:100915010091501009971822Acidaminococcus intestini RyC-MR95 chromosome, complete genomecrispr-associated protein1e-24114
NC_011134:1360122:136847013684701369339870Streptococcus equi subsp. zooepidemicus str. MGCS10565, completeCRISPR-associated protein Cas14e-23108
NC_007929:111092:118952118952119857906Lactobacillus salivarius subsp. salivarius UCC118, complete genomeCRISPR-associated protein2e-21103
NC_015311:2689118:270248427024842702720237Prevotella denticola F0289 chromosome, complete genome1e-1583.6
NC_010816:2252732:226204622620462262465420Bifidobacterium longum DJO10A, complete genomeHypothetical protein for probable DNA repair2e-1377
NC_020126:9726992:9733543973354397345711029Myxococcus stipitatus DSM 14675, complete genomeCRISPR-associated Cas1 family protein2e-1066.6
NC_014215:421683:4441674441674457681602Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,CRISPR-associated protein Cas1/Cas43e-1066.2
NC_012588:800942:8177088177088187331026Sulfolobus islandicus M.14.25 chromosome, complete genomeCRISPR-associated protein Cas15e-1065.5
NC_012632:884811:9030269030269040511026Sulfolobus islandicus M.16.27 chromosome, complete genomeCRISPR-associated protein Cas15e-1065.5
NC_017275:342000:363066363066363944879Sulfolobus islandicus HVE10/4 chromosome, complete genomeCRISPR-associated protein Cas14e-1065.5
NC_012623:1874348:189096318909631891835873Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeCRISPR-associated protein Cas16e-1065.1
NC_012622:681472:704620704620705492873Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeCRISPR-associated protein Cas16e-1065.1
NC_013235:1354443:136212413621241362708585Nakamurella multipartita DSM 44233, complete genome1e-0964.3
NC_017216:1494190:1509814150981415114031590Bifidobacterium animalis subsp. lactis BLC1, complete genomeCRISPR-associated Cas1-Cas4 family protein4e-0962.4
NC_012632:943104:943104943104944018915Sulfolobus islandicus M.16.27 chromosome, complete genomeCRISPR-associated protein Cas16e-0962
NC_017214:191791:2074152074152090461632Bifidobacterium animalis subsp. lactis BB-12 chromosome, completehypothetical protein6e-0962
NC_017215:1499179:1514803151480315164341632Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,hypothetical protein6e-0962
NC_012815:1494263:1509887150988715113771491Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeCRISPR-associated Cas1/Cas4 family protein5e-0962
NC_011835:625472:6410986410986427051608Bifidobacterium animalis subsp. lactis AD011 chromosome, completeCRISPR-associated protein Cas14e-0962
NC_017217:1499832:1515456151545615169461491Bifidobacterium animalis subsp. lactis V9 chromosome, completeCRISPR-associated Cas1/Cas4 family protein6e-0961.6
NC_012814:1494331:1509955150995515114451491Bifidobacterium animalis subsp. lactis Bl-04, complete genomeCRISPR-associated Cas1/Cas4 family protein6e-0961.6
NC_000854:770000:784519784519785502984Aeropyrum pernix K1, complete genomeputative CRISPR-associated protein Cas19e-0961.2
NC_014537:1589125:161406816140681615063996Vulcanisaeta distributa DSM 14429 chromosome, complete genomeCRISPR-associated protein Cas11e-0860.8
NC_011899:1603500:162508916250891626066978Halothermothrix orenii H 168, complete genomeCRISPR-associated protein Cas12e-0860.1
NC_002950:2068500:2069615206961520727103096Porphyromonas gingivalis W83, complete genomeCRISPR-associated protein Cas13e-0859.7
NC_013715:1376985:1377284137728413789661683Rothia mucilaginosa DY-18, complete genomeuncharacterized protein predicted to be involved in DNA repair2e-0757
NC_014471:849032:867168867168868145978Ignisphaera aggregans DSM 17230 chromosome, complete genomeCRISPR-associated protein Cas12e-0757
NC_007181:1818500:182471018247101825615906Sulfolobus acidocaldarius DSM 639, complete genomehypothetical protein2e-0757
NC_018876:168207:1822301822301834321203Methanolobus psychrophilus R15 chromosome, complete genomeCRISPR-associated protein, Cas1 family2e-0756.6
NC_015222:94847:1118831118831131751293Nitrosomonas sp. AL212 chromosome, complete genomeCRISPR-associated protein Cas14e-0755.5
NC_010337:524605:5246055246055256991095Heliobacterium modesticaldum Ice1, complete genomecrispr-associated protein cas15e-0755.5
NC_014836:1108919:1129474112947411304751002Desulfurispirillum indicum S5 chromosome, complete genomeCRISPR-associated protein Cas16e-0755.1
NC_016645:797000:800563800563801450888Pyrobaculum sp. 1860 chromosome, complete genomeCRISPR-associated protein Cas16e-0755.1
NC_003901:678340:683642683642684613972Methanosarcina mazei Go1, complete genomehypothetical protein1e-0653.9
NC_014002:1308458:1322759132275913239761218Methanohalophilus mahii DSM 5219 chromosome, complete genomeCRISPR-associated protein, Cas1 family1e-0653.9
NC_020389:571466:578765578765579664900Methanosarcina mazei Tuc01, complete genomeCRISPR-associated protein Cas11e-0653.9
NC_015416:2838020:2842091284209128431041014Methanosaeta concilii GP-6 chromosome, complete genomecrispr-associated protein Cas12e-0653.1
NC_008639:2358592:2379403237940323815982196Chlorobium phaeobacteroides DSM 266, complete genomeCRISPR-associated protein Cas16e-0651.6