Pre_GI Gene

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Host: NC_017217 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017217:1499832 Bifidobacterium animalis subsp. lactis V9 chromosome, complete

Host Lineage: Bifidobacterium animalis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium animalis and Bifidobacterium lactis were originally considered to be separate species. Recent studies evaluating the DNA relatedness and phenotypic similarities of these species has determined that they represent a single species.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
149983215019102079ABC transporterQuickGO ontologyBLASTP
150190715038801974ABC-type multidrug transport system ATPase and permease componentQuickGO ontologyBLASTP
15038771504428552MarR-type transcriptional regulatorQuickGO ontologyBLASTP
15046861505252567NADPH-dependent reductaseQuickGO ontologyBLASTP
15054951505878384Very short patch repair Vsr endonucleaseQuickGO ontologyBLASTP
15069091507097189hypothetical proteinBLASTP
15074601507720261hypothetical proteinBLASTP
150779115088371047putative CRISPR-associated Csb3 family proteinQuickGO ontologyBLASTP
150884115118943054CRISPR-associated helicase Cas3 family proteinQuickGO ontologyBLASTP
151188515135221638putative CRISPR-associated Csb2 family proteinQuickGO ontologyBLASTP
151354115147341194putative CRISPR-associated Csb1 family proteinQuickGO ontologyBLASTP
15151511515444294CRISPR-associated Cas2 family proteinQuickGO ontologyBLASTP
151545615169461491CRISPR-associated Cas1Cas4 family proteinQuickGO ontologyBLASTP
151870015198511152gamma-glutamylcysteine synthetaseQuickGO ontologyBLASTP
152004515247634719hypothetical proteinBLASTP
15250131525582570hypothetical proteinBLASTP
15255791525980402transmembrane proteinQuickGO ontologyBLASTP
15262431526932690hypothetical proteinBLASTP
15269291527678750anaerobic ribonucleoside-triphosphate reductase activating proteinQuickGO ontologyBLASTP
152802015304462427anaerobic ribonucleoside triphosphate reductaseQuickGO ontologyBLASTP