Pre_GI Gene

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Host: NC_017216 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017216:1494190 Bifidobacterium animalis subsp. lactis BLC1, complete genome

Host Lineage: Bifidobacterium animalis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium animalis and Bifidobacterium lactis were originally considered to be separate species. Recent studies evaluating the DNA relatedness and phenotypic similarities of these species has determined that they represent a single species.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
149419014962682079ABC transporterQuickGO ontologyBLASTP
149626514982381974ABC-type multidrug transport system ATPase and permease componentQuickGO ontologyBLASTP
14982351498786552transcriptional regulator MarR familyQuickGO ontologyBLASTP
14990441499610567NADPH-dependent FMN reductaseQuickGO ontologyBLASTP
14997241500236513Very short patch repair Vsr endonucleaseQuickGO ontologyBLASTP
15012401501455216hypothetical proteinBLASTP
15017821502090309hypothetical proteinBLASTP
150214915031951047putative CRISPR-associated Csb3 family proteinQuickGO ontologyBLASTP
150319915062523054CRISPR-associated helicase Cas3 family proteinQuickGO ontologyBLASTP
150624315078801638putative CRISPR-associated Csb2 family proteinQuickGO ontologyBLASTP
150789915090951197putative CRISPR-associated Csb1 family proteinQuickGO ontologyBLASTP
15095091509802294CRISPR-associated Cas2 family proteinQuickGO ontologyBLASTP
150981415114031590CRISPR-associated Cas1-Cas4 family proteinQuickGO ontologyBLASTP
151305815143291272glutamate--cysteine ligaseQuickGO ontologyBLASTP
151440315190794677putative CoA-substrate-specific enzyme activaseQuickGO ontologyBLASTP
15193231519940618hypothetical proteinBLASTP
15199371520338402transmembrane proteinQuickGO ontologyBLASTP
15204271521290864hypothetical proteinBLASTP
15212871522036750anaerobic ribonucleoside-triphosphate reductase activating proteinQuickGO ontologyBLASTP
152237815248042427anaerobic ribonucleoside triphosphate reductaseQuickGO ontologyBLASTP