Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:1923059:1933585 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1933585, End: 1935432, Length: 1848

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:1923059:1931694193169419335021809Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeglycosyl transferase family 86e-162571
NC_012917:1923059:1935634193563419374661833Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeglycosyl transferase family 87e-161567
NC_009952:3596399:3608567360856736095951029Dinoroseobacter shibae DFL 12, complete genomelipopolysaccharide 18e-1272.8
NC_016109:3875617:389617138961713897049879Kitasatospora setae KM-6054, complete genomeputative glycosyltransferase3e-1067.4
NC_008312:1725763:172689217268921727728837Trichodesmium erythraeum IMS101, complete genomeglycosyl transferase, family 87e-1066.2
NC_011740:4007000:4016505401650540175211017Escherichia fergusonii ATCC 35469, complete genomeUDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase2e-0964.7
NC_007606:3784847:3793627379362737946551029Shigella dysenteriae Sd197, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase2e-0861.6
NC_010498:4031500:4039379403937940404071029Escherichia coli SMS-3-5, complete genomelipopolysaccharide 1,2-galactosyltransferase2e-0861.2
NC_011750:4307166:4316278431627843173061029Escherichia coli IAI39 chromosome, complete genomeUDP-galactose:(Galactosyl) LPS alpha1, 2-galactosyltransferase2e-0861.2
NC_012947:94930:1044721044721054971026Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLipopolysaccharide glucosyltransferase I2e-0861.2
NC_012967:3729813:3738940373894037399651026Escherichia coli B str. REL606 chromosome, complete genomeUDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase2e-0861.2
NC_007384:3956465:3965496396549639665211026Shigella sonnei Ss046, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase2e-0861.2
NC_016822:4093000:4102356410235641033811026Shigella sonnei 53G, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase2e-0861.2
CP002185:3998112:4007227400722740082551029Escherichia coli W, complete genomelipopolysaccharide glucosyltransferase I2e-0861.2
CP002516:88500:9781897818988461029Escherichia coli KO11, complete genomeLipopolysaccharide glucosyltransferase I2e-0861.2
NC_009800:3821824:3830942383094238319671026Escherichia coli HS, complete genomelipopolysaccharide 1,2-galactosyltransferase2e-0861.2
NC_010468:80000:8938989389904141026Escherichia coli ATCC 8739, complete genomeLipopolysaccharide glucosyltransferase I2e-0861.2
NC_016902:88500:9781897818988461029Escherichia coli KO11FL chromosome, complete genomeLipopolysaccharide glucosyltransferase I2e-0861.2
NC_015873:1901939:1911007191100719120141008Megasphaera elsdenii DSM 20460, complete genomelipopolysaccharide 17e-0859.7
NC_007946:4050762:4059886405988640609141029Escherichia coli UTI89, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase8e-0859.3
NC_008253:3896704:3905828390582839068561029Escherichia coli 536, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase WaaW8e-0859.3
NC_008563:4083558:4092682409268240937101029Escherichia coli APEC O1, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase8e-0859.3
NC_004431:4223232:4232356423235642333841029Escherichia coli CFT073, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase8e-0859.3
NC_011742:3998285:4007409400740940084371029Escherichia coli S88 chromosome, complete genomeUDP-galactose:(Galactosyl) LPS alpha1, 2-galactosyltransferase8e-0859.3
NC_009801:4108179:4117297411729741183221026Escherichia coli E24377A, complete genomelipopolysaccharide 1,2-galactosyltransferase1e-0758.9
NC_011741:3862935:3872053387205338730781026Escherichia coli IAI1 chromosome, complete genomeUDP-galactose:(Galactosyl) LPS alpha1, 2-galactosyltransferase2e-0758.2
CU928160:3862935:3872053387205338730781026Escherichia coli IAI1 chromosome, complete genomeUDP-galactose:(Galactosyl) LPS alpha1, 2-galactosyltransferase2e-0758.2
NC_000913:3786124:3799006379900638000221017Escherichia coli K12, complete genomeUDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase3e-0757.4
NC_010473:3883701:3896583389658338975991017Escherichia coli str. K-12 substr. DH10B, complete genomeUDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase3e-0757.4
AC_000091:3827856:3838416383841638394321017Escherichia coli W3110 DNA, complete genomeUDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase3e-0757.4
NC_012759:3675396:3687332368733236883481017Escherichia coli BW2952 chromosome, complete genomeUDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase3e-0757.4
NC_013716:4408201:4418866441886644198821017Citrobacter rodentium ICC168, complete genomeUDP-glucose:(galactosyl) LPS alpha-1,2-glucosyltransferase4e-0757
NC_011601:4036590:4047357404735740483731017Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeUDP-D-glucose: (galactosyl) lipopolysaccharide glucosyltransferase5e-0756.6
NC_009792:4658909:466842146684214669365945Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-0756.6
NC_011958:735755:777563777563778477915Rhodobacter sphaeroides KD131 chromosome 2, complete genomeLipopolysaccharide 3-alpha-galactosyltransferase7e-0756.2
NC_010658:3774110:3784183378418337852081026Shigella boydii CDC 3083-94, complete genomelipopolysaccharide 1,2-galactosyltransferase6e-0756.2
NC_007613:3637832:3646959364695936479841026Shigella boydii Sb227, complete genomeUDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase6e-0756.2
NC_011741:3862935:3874818387481838758341017Escherichia coli IAI1 chromosome, complete genomeUDP-glucose:(glucosyl) LPS alpha1, 3-glucosyltransferase2e-0655.1
CU928160:3862935:3874818387481838758341017Escherichia coli IAI1 chromosome, complete genomeUDP-glucose:(Glucosyl) LPS alpha1, 3-glucosyltransferase2e-0655.1
NC_010498:4031500:4042147404214740431631017Escherichia coli SMS-3-5, complete genomelipopolysaccharide 1,3-galactosyltransferase3e-0654.3
NC_006347:5027580:5030799503079950321481350Bacteroides fragilis YCH46, complete genomeputative glycosyltransferase4e-0653.9
NC_010468:80000:8663386633876491017Escherichia coli ATCC 8739, complete genomeLipopolysaccharide 3-alpha-galactosyltransferase4e-0653.9
NC_007384:3956465:3962740396274039637561017Shigella sonnei Ss046, complete genomeUDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase4e-0653.5
NC_016822:4093000:4099600409960041006161017Shigella sonnei 53G, complete genomelipopolysaccharide 1,3-galactosyltransferase4e-0653.5
NC_009348:161244:167533167533168498966Aeromonas salmonicida subsp. salmonicida A449, complete genomeglycosyl transferase family protein4e-0653.5
NC_008253:3896704:3908596390859639096121017Escherichia coli 536, complete genomeUDP-glucose:(glucosyl) LPS alpha1,3-glucosyltransferase WaaO6e-0653.1
NC_009792:4658909:4670422467042246714411020Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-0653.1
NC_011750:4307166:4319046431904643200621017Escherichia coli IAI39 chromosome, complete genomeUDP-glucose:(Glucosyl) LPS alpha1, 3-glucosyltransferase7e-0652.8
NC_009801:4108179:4120062412006241210781017Escherichia coli E24377A, complete genomelipopolysaccharide 1,3-galactosyltransferase7e-0652.8
CP002516:88500:9506295062960781017Escherichia coli KO11, complete genomeLipopolysaccharide 3-alpha-galactosyltransferase7e-0652.8
CP002185:3998112:4009995400999540110111017Escherichia coli W, complete genomelipopolysaccharide 3-alpha-galactosyltransferase7e-0652.8
NC_012947:94930:1009401009401019561017Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeLipopolysaccharide 3-alpha-galactosyltransferase7e-0652.8
NC_012967:3729813:3742481374248137434971017Escherichia coli B str. REL606 chromosome, complete genomeUDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO7e-0652.8
NC_016902:88500:9506295062960781017Escherichia coli KO11FL chromosome, complete genomeLipopolysaccharide 3-alpha-galactosyltransferase7e-0652.8
NC_008563:4083558:4095450409545040964661017Escherichia coli APEC O1, complete genomelipopolysaccharide 1,3-galactosyltransferase7e-0652.8
NC_007946:4050762:4062654406265440636701017Escherichia coli UTI89, complete genomelipopolysaccharide 1,3-galactosyltransferase7e-0652.8
NC_011742:3998285:4010177401017740111931017Escherichia coli S88 chromosome, complete genomeUDP-glucose:(Glucosyl) LPS alpha1, 3-glucosyltransferase7e-0652.8
NC_007606:3784847:3796395379639537974111017Shigella dysenteriae Sd197, complete genomeLipopolysaccharide 1,3-galactosyltransferase8e-0652.8