Pre_GI: BLASTP Hits

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Query: NC_012808:3972983:3994502 Methylobacterium extorquens AM1, complete genome

Start: 3994502, End: 3995422, Length: 921

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004463:1369165:136828713682871369225939Bradyrhizobium japonicum USDA 110, complete genomedehydrogenase2e-58225
NC_007492:3180480:320861632086163209599984Pseudomonas fluorescens PfO-1, complete genomeShort-chain dehydrogenase/reductase SDR5e-46184
NC_015703:4483500:451396545139654514888924Runella slithyformis DSM 19594 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-45183
NC_015434:666692:697773697773698678906Verrucosispora maris AB-18-032 chromosome, complete genomeshort-chain dehydrogenase/reductase sdr1e-41170
NC_015379:3570658:357604135760413576991951Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative short chain dehydrogenase4e-41168
NC_010475:1563578:156504515650451565962918Synechococcus sp. PCC 7002, complete genomeoxidoreductase, short chain dehydrogenase/reductase family4e-41168
NC_005071:523423:530611530611531513903Prochlorococcus marinus str. MIT 9313, complete genomeShort-chain dehydrogenase/reductase (SDR) superfamily7e-41167
NC_014210:5048502:506555750655575066495939Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,short-chain dehydrogenase/reductase SDR3e-38159
NC_010407:1114408:113309811330981134057960Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative oxidoreductase1e-36153
NC_005070:2308363:230913623091362310053918Synechococcus sp. WH 8102, complete genomeShort-chain dehydrogenase/reductase (SDR) superfamily3e-36152
NC_021177:2309615:232745723274572328410954Streptomyces fulvissimus DSM 40593, complete genomeShort chain dehydrogenase2e-35149
NC_015957:5225903:523357652335765234457882Streptomyces violaceusniger Tu 4113 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-35149
NC_016114:7252500:727252672725267273431906Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-34146
NC_014210:1625954:163991916399191640866948Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,short-chain dehydrogenase/reductase SDR2e-33143
NC_003296:1419992:141999214199921420912921Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE OXIDOREDUCTASE PROTEIN2e-33143
NC_013406:3583474:359950735995073600415909Paenibacillus sp. Y412MC10 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR4e-33142
NC_016887:4343830:434953643495364350498963Nocardia cyriacigeorgica GUH-2, complete genomeputative Short-chain dehydrogenase/reductase2e-32139
NC_015167:1911758:191175819117581912702945Cellulophaga lytica DSM 7489 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR4e-32138
NC_009664:4423829:450109845010984502078981Kineococcus radiotolerans SRS30216, complete genomeshort-chain dehydrogenase/reductase SDR5e-32138
NC_016609:701500:714889714889715845957Niastella koreensis GR20-10 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-31137
NC_009254:442360:455734455734456645912Burkholderia vietnamiensis G4 chromosome 3, complete sequenceshort-chain dehydrogenase/reductase SDR6e-30131
NC_009380:3384737:339930533993053400222918Salinispora tropica CNB-440 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-28127
NC_003888:211748:228714228714229649936Streptomyces coelicolor A3(2), complete genomeoxidoreductase2e-28126
NC_015957:3282183:328377132837713284580810Streptomyces violaceusniger Tu 4113 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR7e-28124
NC_010515:2449143:246325224632522464157906Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceshort-chain dehydrogenase/reductase SDR4e-24112
NC_014318:6539137:654020665402066541066861Amycolatopsis mediterranei U32 chromosome, complete genomeshort-chain dehydrogenase2e-23109
NC_017186:6539181:654025065402506541098849Amycolatopsis mediterranei S699 chromosome, complete genomeshort-chain dehydrogenase9e-23107
NC_016582:3763476:377629737762973777244948Streptomyces bingchenggensis BCW-1 chromosome, complete genomedehydrogenase8e-22104
NC_013037:1072266:1078720107872010797451026Dyadobacter fermentans DSM 18053, complete genomeshort-chain dehydrogenase/reductase SDR6e-2098.6
NC_008595:1951887:195825319582531959074822Mycobacterium avium 104, complete genomeretinol dehydrogenase 127e-1994.7
NC_016948:2931285:295277429527742953595822Mycobacterium intracellulare MOTT-64 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR9e-1994.4
NC_016947:1455744:146311314631131463934822Mycobacterium intracellulare MOTT-02 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR3e-1892.4
NC_003888:211748:223294223294224232939Streptomyces coelicolor A3(2), complete genomeshort chain dehydrogenase4e-1892.4
NC_011365:1171536:117581411758141176794981Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-1790.9
NC_012489:3503632:350363235036323504630999Gemmatimonas aurantiaca T-27, complete genomeputative oxidoreductase3e-1789.4
NC_013061:2055000:2056381205638120574001020Pedobacter heparinus DSM 2366, complete genomeshort-chain dehydrogenase/reductase SDR1e-1687.8
NC_008463:1293079:132801213280121328974963Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible dehydrogenase6e-1684.7
NC_013521:2193203:219450221945022195440939Sanguibacter keddieii DSM 10542, complete genomeshort-chain alcohol dehydrogenase5e-1581.6
NC_013235:682902:688792688792689772981Nakamurella multipartita DSM 44233, complete genomeshort-chain dehydrogenase/reductase SDR4e-1479
NC_014364:394899:400305400305401180876Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-1377.4
NC_015381:2859000:2888692288869228897111020Burkholderia gladioli BSR3 chromosome 1, complete sequenceshort-chain dehydrogenase/reductase SDR2e-1377
NC_016906:4562874:456334245633424564334993Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative oxidoreductase, short chain dehydrogenase/reductase family3e-1376.3
NC_010628:2418000:243025524302552431166912Nostoc punctiforme PCC 73102, complete genomeshort-chain dehydrogenase/reductase SDR6e-1375.1
NC_013595:4031947:403606740360674037023957Streptosporangium roseum DSM 43021, complete genomeoxidoreductase2e-1273.6
NC_013440:8405719:8405719840571984067411023Haliangium ochraceum DSM 14365, complete genomeshort-chain dehydrogenase/reductase SDR4e-1272.4
NC_008595:2687245:270797627079762708665690Mycobacterium avium 104, complete genomeretinol dehydrogenase 129e-1271.2
NC_015709:1769806:178661417866141787606993Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeshort-chain dehydrogenase/reductase SDR1e-1067.8
NC_012918:1444333:147487114748711475713843Geobacter sp. M21 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR3e-1065.9
NC_011146:3426500:342666934266693427586918Geobacter bemidjiensis Bem, complete genomeshort-chain dehydrogenase/reductase SDR5e-1065.1
NC_003888:3111998:312861931286193129590972Streptomyces coelicolor A3(2), complete genomeoxidoreductase8e-1064.7
NC_016582:4983222:499673849967384997625888Streptomyces bingchenggensis BCW-1 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR9e-1064.7
NC_009051:1118486:113313511331351133980846Methanoculleus marisnigri JR1, complete genomeshort-chain dehydrogenase/reductase SDR5e-0858.9
NC_009959:55567:771377138699987Dinoroseobacter shibae DFL 12 plasmid pDSHI05, complete sequenceprotochlorophyllide oxidoreductase7e-0755.1
NC_014666:7222000:723498972349897235822834Frankia sp. EuI1c chromosome, complete genomeshort-chain dehydrogenase/reductase SDR1e-0654.3