Pre_GI: BLASTP Hits

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Query: NC_012483:3000619:3014397 Acidobacterium capsulatum ATCC 51196, complete genome

Start: 3014397, End: 3015074, Length: 678

Host Lineage: Acidobacterium capsulatum; Acidobacterium; Acidobacteriaceae; Acidobacteriales; Acidobacteria; Bacteria

General Information: Isolated from acidic mine drainage in Yanahara mine, Okayama, Japan. Acidophilic bacterium. This genus comprises a number of species commonly found in water reservoirs, microbial mats, many different soil types, marine and freshwater sediments, as well as in hot-spring mats and sediments, etc. Furthermore, they sometimes form the dominant group in a habitat. These bacteria are involved in the first step of destruction of biologically complex molecules produced by autotrophic (capable of synthesizing their own nutrients) microorganisms. Acidobacterium capsulatum is an aerobic, mesophilic, chemo-organotroph able to use a variety of carbon sources and to grow up to pH 6.0. The species comprises several strains characterized by orange pigmentation, production of menoquinones as their sole quinones, and branched-chain iso fatty acids as their cell envelope components.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:581143:599375599375600094720Streptomyces cattleya NRRL 8057, complete genomeRNA polymerase ECF-subfamily sigma factor2e-1168.9
NC_014829:4422314:442603644260364426554519Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-1167.4
NC_016631:3114000:313063631306363131205570Granulicella mallensis MP5ACTX8 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit6e-1064.3
NC_004193:241480:250169250169250732564Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase sigma-70 factor2e-0963.2
NC_015160:2239933:226227222622722262844573Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0962.8
NC_011898:426951:428407428407428976570Clostridium cellulolyticum H10, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0962.4
NC_015844:3524175:354680835468083547320513Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor3e-0962
NC_015436:440033:442515442515443042528Spirochaeta coccoides DSM 17374 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0962
NC_013093:2230171:223517522351752235852678Actinosynnema mirum DSM 43827, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0961.6
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit7e-0960.8
NC_020272:3706722:372792437279243728487564Bacillus amyloliquefaciens IT-45, complete genomeRNA polymerase sigma factor SigW8e-0960.5
NC_020410:198000:198744198744199307564Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase ECF(Extracytoplasmic function)-type sigma factor W8e-0960.5
NC_014551:199500:199660199660200223564Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor W8e-0960.5
NC_017188:177500:177639177639178202564Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA polymerase sigma factor SigW8e-0960.5
NC_017190:182449:182449182449183012564Bacillus amyloliquefaciens LL3 chromosome, complete genomeRNA polymerase sigma factor8e-0960.5
NC_017191:183500:183549183549184112564Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA polymerase sigma factor SigW8e-0960.5
NC_021184:3174500:320020332002033200760558Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family2e-0859.3
NC_011830:3369282:338259733825973383103507Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0859.3
NC_015589:2019370:202926920292692029814546Desulfotomaculum ruminis DSM 2154 chromosome, complete genomesigma-70 family RNA polymerase sigma factor4e-0858.2
NC_011961:304158:307073307073307639567Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily6e-0857.8
NC_014171:1018338:103091910309191031539621Bacillus thuringiensis BMB171 chromosome, complete genomeRNA polymerase ECF-type sigma factor6e-0857.8
NC_015914:2769042:276844027684402769051612Cyclobacterium marinum DSM 745 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit8e-0857.4
NC_014933:2240000:224013422401342240682549Bacteroides helcogenes P 36-108 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0857.4
NC_014318:3947845:396962239696223970236615Amycolatopsis mediterranei U32 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily7e-0857.4
NC_017186:3947874:396965139696513970265615Amycolatopsis mediterranei S699 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor7e-0857.4
NC_013595:8553904:857219585721958572755561Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0857
NC_011725:1032500:104531410453141045847534Bacillus cereus B4264 chromosome, complete genomeRNA polymerase factor sigma C1e-0757
NC_007907:2306561:230812823081282308652525Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0756.6
NC_019673:3041936:304282330428233043461639Saccharothrix espanaensis DSM 44229 complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0756.6
NC_017208:1050414:106404110640411064574534Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeRNA polymerase ECF-type sigma factor2e-0756.2
NC_018750:3481476:348147634814763482261786Streptomyces venezuelae ATCC 10712, complete genomeputative RNA polymerase ECF-subfamily sigma factor2e-0755.8
NC_008554:1623041:164580616458061646414609Syntrophobacter fumaroxidans MPOB, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.8
NC_007951:2206263:220626322062632207000738Burkholderia xenovorans LB400 chromosome 1, complete sequenceSigma-24 (FecI)3e-0755.1
NC_013132:2523780:254108925410892541700612Chitinophaga pinensis DSM 2588, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0755.1
NC_014829:259707:280208280208280738531Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0755.1
NC_011830:1190502:120506412050641205564501Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0754.7
NC_012811:139498:143577143577144257681Methylobacterium extorquens AM1 megaplasmid, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily5e-0754.7
NC_011757:1067543:107244910724491073129681Methylobacterium chloromethanicum CM4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0754.7
NC_010475:2188827:218983121898312190430600Synechococcus sp. PCC 7002, complete genometranscription initiation factor sigma E5e-0754.7
NC_016627:689406:701226701226701768543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor8e-0753.9
NC_012660:1579204:161309716130971613678582Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor AlgU1e-0653.5
NC_017200:1157835:117323311732331173853621Bacillus thuringiensis serovar finitimus YBT-020 chromosome,RNA polymerase factor sigma C1e-0653.5
NC_011772:1011220:102153510215351022068534Bacillus cereus G9842, complete genomeRNA polymerase sigma-70 factor, ECF subfamily1e-0653.1
NC_014032:269844:274798274798275382585Salinibacter ruber M8 chromosome, complete genomeRNA polymerase sigma factor1e-0653.1
NC_011969:1084000:109474110947411095211471Bacillus cereus Q1 chromosome, complete genomeRNA polymerase factor sigma c2e-0653.1
NC_007677:241846:245884245884246468585Salinibacter ruber DSM 13855, complete genomepossible sigma-70 factor, ECF subfamily, putative2e-0652.8
NC_010184:1017000:102909510290951029628534Bacillus weihenstephanensis KBAB4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0652.8
NC_010172:480000:497599497599498279681Methylobacterium extorquens PA1, complete genomeRNA polymerase sigma factor, sigma-70 family3e-0652.4
NC_006274:1040836:105320610532061053739534Bacillus cereus E33L, complete genomeRNA polymerase sigma C factor4e-0651.6
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor6e-0651.2
NC_009142:267550:269255269255269797543Saccharopolyspora erythraea NRRL 2338, complete genomeRNA polymerase sigma-70 factor, ECF family5e-0651.2
NC_014328:3294086:329497232949723295487516Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeRNA polymerase sigma-E factor5e-0651.2
NC_016932:175872:183028183028183591564Corynebacterium pseudotuberculosis 316 chromosome, complete genomeRNA polymerase sigma factor8e-0650.8
NC_008536:5192235:520295352029535203483531Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.8
NC_007530:1007140:102029010202901020823534Bacillus anthracis str. 'Ames Ancestor', complete genomeRNA polymerase sigma C factor7e-0650.8
NC_003997:1007139:102029010202901020823534Bacillus anthracis str. Ames, complete genomeRNA polymerase sigma C factor7e-0650.8
NC_012659:1008028:102019010201901020723534Bacillus anthracis str. A0248, complete genomeRNA polymerase factor sigma C7e-0650.8
NC_008600:1042477:105546210554621055995534Bacillus thuringiensis str. Al Hakam, complete genomeRNA polymerase sigma-70 factor, ECF subfamily7e-0650.8
NC_005957:1037205:104952510495251050058534Bacillus thuringiensis serovar konkukian str. 97-27, completeRNA polymerase sigma C factor7e-0650.8
NC_016779:991298:100202010020201002553534Bacillus cereus F837/76 chromosome, complete genomeECF subfamily RNA polymerase sigma-70 factor7e-0650.8
NC_005945:1008000:102009610200961020716621Bacillus anthracis str. Sterne, complete genomeRNA polymerase sigma C factor9e-0650.4