Pre_GI: BLASTP Hits

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Query: NC_011369:1135592:1180073 Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete

Start: 1180073, End: 1181179, Length: 1107

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen-fixing plant symbiont. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of American and African origin used in farming, and is therefore one of the most important clover inoculants but is incompatible with Mediterranean perennial clovers, such as those nodulated by the dissimilar strain WSM1325. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010172:480000:5169065169065180391134Methylobacterium extorquens PA1, complete genomeintegrase family protein9e-65247
NC_007626:3996000:400655640065564007533978Magnetospirillum magneticum AMB-1, complete genomeIntegrase4e-1375.9
NC_012988:4262631:4283693428369342850181326Methylobacterium extorquens DM4, complete genomePhage integrase1e-1274.7
NC_008702:2039462:2046178204617820472541077Azoarcus sp. BH72, complete genomesite-specific recombinase, phage integrase family3e-1273.2
NC_006350:3957454:396679739667973967651855Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative bacteriophage integrase9e-1271.6
NC_007298:1129889:1137870113787011388861017Dechloromonas aromatica RCB, complete genomePhage integrase1e-1171.2
NC_015731:3274739:3293661329366132946981038Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein1e-1170.9
NC_007964:3638415:3655484365548436566981215Nitrobacter hamburgensis X14, complete genomephage integrase2e-1170.5
NC_011415:600375:6083326083326094951164Escherichia coli SE11 chromosome, complete genomephage integrase6e-1168.9
NC_015681:1558873:1561014156101415622041191Thermodesulfatator indicus DSM 15286 chromosome, complete genomeintegrase family protein6e-1168.9
NC_017249:8510121:8538185853818585393841200Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-1168.6
NC_007575:1694877:1714292171429217153981107Sulfurimonas denitrificans DSM 1251, complete genomePhage integrase1e-1067.8
NC_011094:593100:6007016007016018641164Salmonella enterica subsp. enterica serovar Schwarzengrund strprophage DLP12 integrase1e-1067.8
NC_000913:558920:5640385640385652011164Escherichia coli K12, complete genomeDLP12 prophage; predicted integrase2e-1066.6
NC_010473:498252:5033705033705045331164Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted integrase2e-1066.6
AC_000091:558920:5640385640385652011164Escherichia coli W3110 DNA, complete genomepredicted integrase2e-1066.6
NC_012759:461680:4667984667984679611164Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative integrase2e-1066.6
NC_011751:643976:6449436449436461061164Escherichia coli UMN026 chromosome, complete genomeputative integrase; DLP12 prophage2e-1066.6
NC_013282:1200993:1204148120414812053111164Cronobacter turicensis, complete genomeProphage DLP12 integrase3e-1066.2
NC_004463:1717890:174180817418081742662855Bradyrhizobium japonicum USDA 110, complete genomeprobable site-specific integrase/recombinase3e-1066.2
NC_017249:8510121:855152085515208552374855Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein3e-1066.2
NC_011891:17940:2105121051222951245Anaeromyxobacter dehalogenans 2CP-1, complete genomeintegrase family protein3e-1066.2
NC_012967:531000:5369295369295380921164Escherichia coli B str. REL606 chromosome, complete genomeputative integrase4e-1065.9
NC_012947:3231893:3247313324731332484761164Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase4e-1065.9
NC_007651:3719191:373247537324753732954480Burkholderia thailandensis E264 chromosome I, complete sequencesite-specific recombinase, phage integrase family4e-1065.9
NC_009076:3876733:388817438881743888692519Burkholderia pseudomallei 1106a chromosome I, complete sequencesite-specific recombinase, phage integrase family9e-1065.1
NC_011205:609464:6170646170646182271164Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853prophage DLP12 integrase7e-1065.1
NC_008542:1021848:1032954103295410340991146Burkholderia cenocepacia HI2424 chromosome 1, complete sequencephage integrase family protein2e-0963.9
NC_008060:476861:4883074883074894521146Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencephage integrase2e-0963.9
NC_009074:2970435:2991895299189529930401146Burkholderia pseudomallei 668 chromosome I, complete sequencephage integrase4e-0962.8
NC_009052:2683447:2697891269789126990691179Shewanella baltica OS155, complete genomephage integrase family protein4e-0962.8
NC_012796:3600630:3613272361327236143721101Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase7e-0962
NC_008577:2818546:2835885283588528370631179Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein8e-0961.6
NC_010814:3048441:3064888306488830660631176Geobacter lovleyi SZ, complete genomeintegrase family protein2e-0860.8
NC_009012:2927793:2931283293128329323951113Clostridium thermocellum ATCC 27405, complete genomephage integrase2e-0860.8
NC_007520:903799:9043479043479053721026Thiomicrospira crunogena XCL-2, complete genomePhage integrase1e-0860.8
NC_012796:3600630:3625855362585536269551101Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase2e-0860.5
NC_015388:1020747:102930310293031030148846Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeintegrase family protein2e-0860.5
NC_009714:113975:1173851173851185421158Campylobacter hominis ATCC BAA-381, complete genomebacteriophage-related integrase4e-0859.3
NC_013205:1123280:1130843113084311320181176Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,integrase family protein8e-0858.5
NC_012751:1538500:1538746153874615398911146Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeAPSE-2 prophage; integrase1e-0757.8
NC_013926:71186:902119021191023813Aciduliprofundum boonei T469 chromosome, complete genomeintegrase family protein1e-0757.8
NC_009455:53000:820568205683015960Dehalococcoides sp. BAV1 chromosome, complete genomephage integrase family protein1e-0757.8
NC_009253:389835:392779392779393693915Desulfotomaculum reducens MI-1 chromosome, complete genomephage integrase family protein1e-0757.4
NC_013889:1202385:1215812121581212170501239Thioalkalivibrio sp. K90mix chromosome, complete genomeintegrase family protein2e-0757
NC_009832:2460027:2464528246452824658141287Serratia proteamaculans 568, complete genomeintegrase family protein3e-0756.6
NC_009524:861500:8670058670058682101206Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein3e-0756.6
NC_012796:3600630:3647091364709136482151125Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase3e-0756.6
NC_020418:2084937:2084937208493720860881152Morganella morganii subsp. morganii KT, complete genomePhage integrase4e-0755.8
NC_007794:262402:2683062683062695981293Novosphingobium aromaticivorans DSM 12444, complete genomephage integrase5e-0755.8
NC_014844:511552:5180405180405190621023Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeintegrase family protein7e-0755.5
NC_014335:2274774:229993922999392300787849Bacillus cereus biovar anthracis str. CI chromosome, completeDNA integration/recombination/invertion protein6e-0755.5
NC_015593:2553500:2557151255715125582871137Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeintegrase family protein6e-0755.5
NC_010516:2328288:2348452234845223495161065Clostridium botulinum B1 str. Okra, complete genomesite-specific recombinase, phage integrase family8e-0755.1
NC_014376:787460:8084978084978095041008Clostridium saccharolyticum WM1 chromosome, complete genomeintegrase family protein9e-0754.7
NC_007760:4055860:408811340881134088940828Anaeromyxobacter dehalogenans 2CP-C, complete genomePhage integrase1e-0654.7
NC_014972:210500:2252412252412262751035Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein1e-0654.7
NC_011883:2826000:2839403283940328405991197Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,integrase family protein1e-0654.3
NC_017208:3816753:384609438460943846993900Bacillus thuringiensis serovar chinensis CT-43 chromosome, completesite-specific tyrosine recombinase XerC1e-0654.3
NC_011883:2680380:2696622269662226976441023Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,integrase family protein1e-0654.3
NC_012796:77071:1149651149651162001236Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase1e-0654.3
NC_012791:2832001:2839173283917328403361164Variovorax paradoxus S110 chromosome 1, complete genome2e-0653.9
NC_012796:1049034:1129182112918211303061125Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase3e-0653.5
NC_014666:13876:3056730567317601194Frankia sp. EuI1c chromosome, complete genomeintegrase family protein5e-0652.8
NC_010644:1540249:1550592155059215516051014Elusimicrobium minutum Pei191, complete genomeintegrase family protein4e-0652.8
NC_011658:3603009:363402836340283634927900Bacillus cereus AH187 chromosome, complete genomesite-specific tyrosine recombinase XerC4e-0652.8
NC_011969:3575988:357798735779873578886900Bacillus cereus Q1 chromosome, complete genomesite-specific tyrosine recombinase xerc4e-0652.8
NC_003909:3606177:362138136213813622280900Bacillus cereus ATCC 10987, complete genometyrosine recombinase9e-0651.6
NC_011295:33500:368853688537751867Coprothermobacter proteolyticus DSM 5265, complete genometyrosine recombinase XerD9e-0651.6