Pre_GI: BLASTP Hits

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Query: NC_010660:86445:102211 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 102211, End: 102447, Length: 237

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014328:1379437:138056913805691380802234Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative acyl carrier protein5e-0753.1
NC_014964:1309845:131814813181481318375228Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeacyl carrier protein1e-0652
NC_015958:1422319:142996714299671430194228Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeacyl carrier protein1e-0652
NC_012563:2761570:276348327634832763716234Clostridium botulinum A2 str. Kyoto, complete genomeacyl carrier protein2e-0651.6
NC_010516:2567911:257718625771862577419234Clostridium botulinum B1 str. Okra, complete genomeacyl carrier protein2e-0651.6
NC_010520:2635750:265198826519882652221234Clostridium botulinum A3 str. Loch Maree, complete genomeacyl carrier protein2e-0651.6
NC_009698:2420484:243332824333282433561234Clostridium botulinum A str. Hall chromosome, complete genomeacyl carrier protein2e-0651.6
NC_009699:2635745:263765826376582637891234Clostridium botulinum F str. Langeland chromosome, complete genomeacyl carrier protein2e-0651.6
NC_012658:2641446:264720326472032647436234Clostridium botulinum Ba4 str. 657 chromosome, complete genomeacyl carrier protein2e-0651.6
NC_017297:2635892:263780526378052638038234Clostridium botulinum F str. 230613 chromosome, complete genomeacyl carrier protein2e-0651.6
NC_009495:2571732:258896125889612589203243Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeacyl carrier protein2e-0651.6
NC_012438:50845:520955209552328234Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeacyl carrier protein1e-0651.6
NC_011296:102650:106286106286106522237Thermodesulfovibrio yellowstonii DSM 11347, complete genomeacyl carrier protein6e-0649.7
NC_016024:1876000:188391818839181884172255Candidatus Chloracidobacterium thermophilum B chromosome chromosomeacyl carrier protein1e-0548.9