Pre_GI: BLASTP Hits

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Query: NC_010660:175200:190143 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 190143, End: 190643, Length: 501

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011749:34056:535635356354099537Escherichia coli UMN026 plasmid p1ESCUM, complete sequencenuclease2e-88323
NC_007608:97092:110172110172110633462Shigella boydii Sb227 plasmid pSB4_227, complete sequencehypothetical protein4e-81300
NC_017319:192482:205868205868206170303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein2e-51201
NC_004851:191709:205985205985206287303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein2e-51201
NC_007607:87000:104290104290104520231Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein1e-37155
NC_007607:87000:103259103259103561303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein3e-37154
NC_016616:760145:768659768659769195537Dechlorosoma suillum PS chromosome, complete genomemicrococcal nuclease-like nuclease1e-25115
NC_014972:210500:217951217951218613663Desulfobulbus propionicus DSM 2032 chromosome, complete genomenuclease5e-24110
NC_008786:4070753:407453540745354074996462Verminephrobacter eiseniae EF01-2, complete genomenuclease (SNase domain protein)6e-24109
NC_013132:782846:798974798974799489516Chitinophaga pinensis DSM 2588, complete genomenuclease (SNase domain protein)3e-22104
NC_012796:4693500:472231247223124722971660Desulfovibrio magneticus RS-1, complete genomeputative nuclease3e-22104
NC_017319:192482:207489207489207656168Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein5e-22103
NC_004851:191709:207606207606207773168Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein5e-22103
NC_016513:1924242:192915919291591929659501Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeprotein ParB3e-21101
NC_013416:1588369:159322915932291593729501Aggregatibacter actinomycetemcomitans D11S-1, complete genomeprotein ParB3e-21101
NC_009715:1829978:186455318645531864999447Campylobacter curvus 525.92 chromosome, complete genomeATP-dependent hsl protease ATP-binding subunit HslU9e-2096.3
NC_013222:615948:631046631046631489444Robiginitalea biformata HTCC2501, complete genomepredicted micrococcal nuclease-like protein9e-1992.8
NC_008751:2988235:300617030061703006868699Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomenuclease (SNase domain protein)9e-1992.8
NC_016616:2112211:211854521185452119039495Dechlorosoma suillum PS chromosome, complete genomemicrococcal nuclease-like nuclease1e-1892
NC_012969:2136243:221955522195552220109555Methylovorus glucosetrophus SIP3-4 chromosome, complete genomenuclease2e-1891.7
NC_014733:2095996:211619221161922116746555Methylovorus sp. MP688 chromosome, complete genomenuclease (snase domain protein)3e-1890.9
NC_012918:2758775:279392827939282794467540Geobacter sp. M21 chromosome, complete genomenuclease7e-1889.7
NC_008255:1344674:136424313642431364743501Cytophaga hutchinsonii ATCC 33406, complete genomenuclease2e-1788.2
NC_011667:1:391239124400489Thauera sp. MZ1T plasmid pTha01, complete sequencenuclease (SNase domain protein)5e-1787
NC_012560:5276000:528070452807045281261558Azotobacter vinelandii DJ, complete genomeStaphylococcus nuclease (SNase-like)2e-1684.7
NC_021150:5234000:523859652385965239153558Azotobacter vinelandii CA6, complete genomenuclease2e-1684.7
NC_002937:1548081:156013015601301560939810Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completenuclease domain protein2e-1582
NC_005070:1486496:152121015212101521866657Synechococcus sp. WH 8102, complete genomeStaphylococcal nuclease homologue2e-1581.6
NC_009481:1927995:193761319376131938212600Synechococcus sp. WH 7803 chromosome, complete genomenuclease-like protein2e-1581.3
NC_007517:3430237:344916434491643449706543Geobacter metallireducens GS-15, complete genomeSNase-like nuclease4e-1580.5
NC_007513:438438:462952462952463425474Synechococcus sp. CC9902, complete genomenuclease (SNase-like)3e-1477.8
NC_009481:845500:853538853538854140603Synechococcus sp. WH 7803 chromosome, complete genomenuclease-like protein6e-1477
NC_002937:2068117:208797820879782088394417Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completenuclease, putative6e-1476.6
NC_017322:1260526:126853212685321269194663Sinorhizobium meliloti BL225C chromosome, complete genomenuclease6e-1373.6
NC_014910:1708045:172307217230721723551480Alicycliphilus denitrificans BC chromosome, complete genomenuclease (snase domain-containing protein)1e-1272.4
NC_014931:2949697:295952229595222960094573Variovorax paradoxus EPS chromosome, complete genomenuclease (SNase domain-containing protein)2e-1272
NC_005070:334952:343315343315343929615Synechococcus sp. WH 8102, complete genomeStaphylococcal nuclease homologue2e-1271.6
NC_018000:4958637:496937049693704970026657Sinorhizobium fredii USDA 257 chromosome, complete genomenuclease6e-1270.1
NC_012918:2758775:280401928040192804495477Geobacter sp. M21 chromosome, complete genomenuclease2e-1168.9
NC_005071:288922:339767339767340351585Prochlorococcus marinus str. MIT 9313, complete genomeStaphylococcus nuclease (SNase) homologues2e-1168.6
NC_017323:599549:643869643869644378510Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequencenuclease2e-1168.2
NC_007604:2213659:222852922285292229017489Synechococcus elongatus PCC 7942, complete genomenuclease (SNase-like)3e-1167.4
NC_018643:641360:657165657165657686522Alpha proteobacterium HIMB5 chromosome, complete genomenuclease family protein7e-1166.6
NC_006576:2073163:208801320880132088501489Synechococcus elongatus PCC 6301, complete genomehypothetical protein8e-1166.2
NC_003919:3812778:383808738380873838824738Xanthomonas axonopodis pv. citri str. 306, complete genomesuccinoglycan biosynthesis protein1e-1065.9
NC_012438:192065:198467198467198997531Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomethermonuclease4e-1064.3
NC_016941:807155:842093842093842761669Staphylococcus aureus subsp. aureus MSHR1132, complete genomethermonuclease8e-1062.8
NC_013526:911909:922406922406923182777Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeMicrococcal nuclease2e-0962
NC_014408:806720:815878815878816354477Methanothermobacter marburgensis str. Marburg chromosome, completenuclease3e-0960.8
NC_009927:253250:253250253250253777528Acaryochloris marina MBIC11017 plasmid pREB2, complete sequencestaphylococcus nuclease, putative4e-0960.8
NC_017342:2486000:249197024919702492656687Staphylococcus aureus subsp. aureus TCH60 chromosome, completethermonuclease5e-0960.5
NC_017337:853221:866882866882867568687Staphylococcus aureus subsp. aureus ED133 chromosome, completestaphylococcal thermonuclease precursor5e-0960.5
NC_002952:884500:895661895661896347687Staphylococcus aureus subsp. aureus MRSA252, complete genomethermonuclease precursor5e-0960.5
NC_012587:1203103:120868512086851209197513Rhizobium sp. NGR234, complete genomesuccinoglycan biosynthesis protein ExoI5e-0960.5
NC_016928:838500:849565849565850251687Staphylococcus aureus subsp. aureus M013 chromosome, completephage-encoded chromosome degrading nuclease YokF7e-0960.1
NC_002745:840848:855748855748856434687Staphylococcus aureus subsp. aureus N315, complete genomestaphylococcal nuclease6e-0960.1
NC_017351:885000:895780895780896466687Staphylococcus aureus subsp. aureus 11819-97 chromosome, completethermonuclease6e-0960.1
NC_009720:4124255:414748641474864147971486Xanthobacter autotrophicus Py2, complete genomenuclease6e-0960.1
NC_009138:467268:475095475095475412318Herminiimonas arsenicoxydans, complete genomehypothetical protein8e-0959.7
NC_008148:2053467:207091520709152071490576Rubrobacter xylanophilus DSM 9941, complete genomenuclease (SNase-like)1e-0859.3
NC_009720:2489003:2504430250443025060341605Xanthobacter autotrophicus Py2, complete genomenuclease1e-0859.3
NC_011757:276953:295697295697296380684Methylobacterium chloromethanicum CM4, complete genomenuclease (SNase domain protein)2e-0858.5
NC_012988:4262631:426263142626314263314684Methylobacterium extorquens DM4, complete genomenuclease2e-0858.2
NC_012491:3704000:371231537123153713247933Brevibacillus brevis NBRC 100599, complete genomeputative nuclease precursor5e-0857
NC_009637:438037:457351457351457902552Methanococcus maripaludis C7 chromosome, complete genomenuclease6e-0856.6
NC_010424:825117:827685827685828668984Candidatus Desulforudis audaxviator MP104C, complete genomenuclease (SNase domain protein)9e-0856.2
NC_013940:110340:120471120471121010540Deferribacter desulfuricans SSM1 megaplasmid pDF308, completethermonuclease1e-0756.2
NC_010172:57500:744217442175104684Methylobacterium extorquens PA1, complete genomenuclease (SNase domain protein)2e-0755.1
NC_020244:1875834:190126919012691901904636Bacillus subtilis XF-1, complete genomeDNA nuclease, lipoprotein2e-0755.1
NC_016047:1978312:199667619966761997377702Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completethermonuclease2e-0755.1
NC_014122:773825:792300792300792836537Methanocaldococcus infernus ME chromosome, complete genomenuclease (SNase domain protein)2e-0755.1
NC_009135:330628:350253350253350804552Methanococcus maripaludis C5, complete genomenuclease (SNase domain protein)3e-0754.7
NC_000964:1873398:189458618945861895221636Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-0754.7
NC_002678:341996:350305350305351066762Mesorhizobium loti MAFF303099, complete genomesuccinoglycan biosynthesis protein exoI3e-0754.7
NC_014976:17909:213822138222017636Bacillus subtilis BSn5 chromosome, complete genomeDNA nuclease, lipoprotein3e-0754.7
NC_014253:431942:438386438386438943558Methanohalobium evestigatum Z-7303 chromosome, complete genomenuclease3e-0754.7
NC_015847:1261276:127547112754711276028558Methanococcus maripaludis XI chromosome, complete genomenuclease2e-0754.7
NC_012791:4794362:481144748114474811986540Variovorax paradoxus S110 chromosome 1, complete genomenuclease (SNase domain protein)4e-0754.3
NC_003450:1903110:196634919663491966987639Corynebacterium glutamicum ATCC 13032, complete genomemicrococcal nuclease-like protein3e-0754.3
NC_017195:1852935:187656318765631877201639Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completethermonuclease3e-0754.3
NC_019896:2158223:217364121736412174276636Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein3e-0754.3
UCMB5137:2054735:206663720666372067335699Bacillus atrophaeus UCMB-5137hypothetical protein9e-0752.8
NC_013849:397947:409085409085409888804Ferroglobus placidus DSM 10642 chromosome, complete genomenuclease (SNase domain protein)2e-0651.6
NC_014479:1831404:185024218502421850685444Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeSPbeta phage DNA nuclease, lipoprotein2e-0651.6