Pre_GI: BLASTP Hits

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Query: NC_010658:4494103:4506477 Shigella boydii CDC 3083-94, complete genome

Start: 4506477, End: 4506872, Length: 396

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:4821519:482803448280344828429396Escherichia coli SMS-3-5, complete genomeendoribonuclease L-PSP family protein2e-72270
NC_007613:4217557:424919142491914249586396Shigella boydii Sb227, complete genomehypothetical protein3e-72270
NC_012967:4449576:445609144560914456486396Escherichia coli B str. REL606 chromosome, complete genomeputative mRNA endoribonuclease4e-72269
NC_012947:3947238:395762239576223958017396Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeendoribonuclease L-PSP4e-72269
NC_010473:4564590:457264545726454573040396Escherichia coli str. K-12 substr. DH10B, complete genomepredicted mRNA endoribonuclease2e-71267
NC_000913:4462782:447083744708374471232396Escherichia coli K12, complete genomepredicted mRNA endoribonuclease2e-71267
AC_000091:4472000:447749444774944477889396Escherichia coli W3110 DNA, complete genomepredicted mRNA endoribonuclease2e-71267
NC_011742:4795733:480224848022484802643396Escherichia coli S88 chromosome, complete genomemRNA endoribonuclease1e-70264
NC_017046:1574057:158274215827421583158417Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-59228
NC_016857:1576636:158285815828581583319462Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative translation initiation inhibitor2e-59227
NC_016863:1575488:158417315841731584562390Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative translation initiation inhibitor2e-59226
NC_016860:1614280:162369516236951624084390Salmonella enterica subsp. enterica serovar Typhimurium strendoribonuclease L-PSP family protein2e-59226
NC_016856:1621279:163598216359821636371390Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative translation initiation inhibitor2e-59226
NC_016810:1576636:158285815828581583247390Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-59226
NC_003197:1611302:162600516260051626394390Salmonella typhimurium LT2, complete genomeputative translation initiation inhibitor2e-59226
NC_011149:1578451:158904115890411589430390Salmonella enterica subsp. enterica serovar Agona str. SL483,endoribonuclease L-PSP family protein2e-59226
NC_015761:1488807:150350915035091503898390Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-59226
NC_009436:3807420:382036738203673820762396Enterobacter sp. 638, complete genomeendoribonuclease L-PSP1e-56218
NC_009668:1591290:159437815943781594770393Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceendoribonuclease L-PSP4e-56216
NC_020181:1653261:166517216651721665573402Enterobacter aerogenes EA1509E, complete genomeprobable translation initiation inhibitor protein8e-54208
NC_015663:3742738:375266437526643753065402Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-53207
NC_016612:5208936:522213152221315222526396Klebsiella oxytoca KCTC 1686 chromosome, complete genomeendoribonuclease L-PSP family protein9e-43171
NC_011283:1811000:188610318861031886492390Klebsiella pneumoniae 342 chromosome, complete genomeendoribonuclease L-PSP family protein6e-42169
NC_011094:1584038:159345315934531593779327Salmonella enterica subsp. enterica serovar Schwarzengrund strendoribonuclease L-PSP3e-41167
NC_011992:863174:876370876370876777408Acidovorax ebreus TPSY, complete genomeEndoribonuclease L-PSP2e-35147
NC_008313:886248:911312911312911713402Ralstonia eutropha H16 chromosome 1, complete sequenceputative translation initiation inhibitor, yjgF family3e-1993.6
NC_010512:110932:130333130333130731399Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceEndoribonuclease L-PSP4e-1993.2
NC_007974:138176:150604150604151227624Ralstonia metallidurans CH34 chromosome 2, complete sequenceEndoribonuclease L-PSP4e-1683.2
NC_003296:1665569:166827616682761668713438Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein4e-1580.1
NC_003296:1696958:169846616984661698903438Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSMEMBRANE PROTEIN4e-1580.1
NC_007348:2519447:254236525423652542763399Ralstonia eutropha JMP134 chromosome 2, complete sequenceEndoribonuclease L-PSP5e-1579.7
NC_020829:4390417:440964644096464410062417Pseudomonas denitrificans ATCC 13867, complete genomeendoribonuclease L-PSP8e-1579
NC_021066:839734:843254843254843466213Raoultella ornithinolytica B6, complete genometranslation initiation inhibitor, yjgF family protein3e-1270.5
NC_010172:1199725:120944312094431209829387Methylobacterium extorquens PA1, complete genomeEndoribonuclease L-PSP2e-1167.8
NC_011757:1246000:127379612737961274182387Methylobacterium chloromethanicum CM4, complete genomeEndoribonuclease L-PSP4e-1166.6
NC_010645:1341475:136079613607961361197402Bordetella avium 197N, complete genomeendoribonuclease5e-1063.2
NC_014210:5309121:531140453114045311829426Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Endoribonuclease L-PSP7e-1062.8
NC_014640:2693060:270855427085542708949396Achromobacter xylosoxidans A8 chromosome, complete genomeendoribonuclease L-PSP family protein8e-1062.4
NC_010645:1341475:136041313604131360799387Bordetella avium 197N, complete genomeendoribonuclease5e-0959.7
NC_015690:3941113:397856539785653978864300Paenibacillus mucilaginosus KNP414 chromosome, complete genomeendoribonuclease L-PSP7e-0959.3
NC_016935:1365463:139792113979211398301381Paenibacillus mucilaginosus 3016 chromosome, complete genomeendoribonuclease L-PSP7e-0959.3
NC_010623:1961685:201993020199302020382453Burkholderia phymatum STM815 chromosome 2, complete sequenceEndoribonuclease L-PSP1e-0858.5
NC_011126:129937:135039135039135419381Hydrogenobaculum sp. Y04AAS1, complete genomeendoribonuclease L-PSP2e-0858.2
NC_012982:2415237:243796724379672438374408Hirschia baltica ATCC 49814, complete genomeEndoribonuclease L-PSP2e-0857.8
NC_015277:5211779:523113752311375231598462Sphingobacterium sp. 21 chromosome, complete genomeEndoribonuclease L-PSP2e-0857.8
NC_010170:2374852:237607623760762376462387Bordetella petrii, complete genomeputative translational inhibitor5e-0856.6
NC_014221:398636:411607411607411999393Truepera radiovictrix DSM 17093 chromosome, complete genomeendoribonuclease L-PSP5e-0856.2
NC_015496:2155816:216533021653302165776447Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeEndoribonuclease L-PSP6e-0856.2
NC_003112:673772:689773689773690162390Neisseria meningitidis MC58, complete genomeputative ribonuclease1e-0755.5
NC_010120:609323:631641631641632030390Neisseria meningitidis 053442, complete genomeribonuclease, putative1e-0755.5
NC_008767:613394:634500634500634889390Neisseria meningitidis FAM18, complete genomehypothetical protein1e-0755.5
NC_013016:571255:589884589884590273390Neisseria meningitidis alpha14 chromosome, complete genometranslation initiation inhibitor1e-0755.5
NC_017501:1680075:168249516824951682884390Neisseria meningitidis 8013, complete genomeputative endoribonuclease1e-0755.5
NC_017505:670919:691717691717692106390Neisseria meningitidis alpha710 chromosome, complete genomehypothetical protein1e-0755.5
NC_017513:618500:642487642487642876390Neisseria meningitidis G2136 chromosome, complete genomeendoribonuclease L-PSP1e-0755.5
NC_017514:1568591:156925115692511569640390Neisseria meningitidis M01-240149 chromosome, complete genomeendoribonuclease L-PSP1e-0755.5
NC_017516:1613762:161442216144221614811390Neisseria meningitidis H44/76 chromosome, complete genomeendoribonuclease L-PSP1e-0755.5
NC_017518:743955:765382765382765771390Neisseria meningitidis NZ-05/33 chromosome, complete genomeendoribonuclease L-PSP1e-0755.5
NC_017515:1601954:160261416026141603003390Neisseria meningitidis M04-240196 chromosome, complete genomeendoribonuclease L-PSP9e-0855.5
NC_003296:1665569:167318916731891673566378Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-0755.1
NC_003296:1696958:170337917033791703756378Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-0755.1
NC_016860:4024000:404045640404564040836381Salmonella enterica subsp. enterica serovar Typhimurium strtranslation initiation inhibitor3e-0753.9
NC_017517:703811:719695719695720084390Neisseria meningitidis M01-240355 chromosome, complete genomeendoribonuclease L-PSP3e-0753.9
NC_020411:114683:138539138539138919381Hydrogenobaculum sp. HO, complete genomeendoribonuclease L-PSP4e-0753.5
NC_015587:114684:138540138540138920381Hydrogenobaculum sp. SHO chromosome, complete genomeendoribonuclease L-PSP4e-0753.5
NC_015557:114648:138504138504138884381Hydrogenobaculum sp. 3684 chromosome, complete genomeendoribonuclease L-PSP4e-0753.5
NC_013132:7204082:7226261722626172280031743Chitinophaga pinensis DSM 2588, complete genomeEndoribonuclease L-PSP1e-0652.4
NC_007948:360199:369335369335369733399Polaromonas sp. JS666, complete genomeEndoribonuclease L-PSP1e-0652
NC_020126:7451894:745891074589107459344435Myxococcus stipitatus DSM 14675, complete genomeendoribonuclease L-PSP1e-0652
NC_010623:1961685:197300619730061973410405Burkholderia phymatum STM815 chromosome 2, complete sequenceEndoribonuclease L-PSP2e-0651.6
NC_012880:3645304:364843836484383648830393Dickeya dadantii Ech703, complete genomeEndoribonuclease L-PSP2e-0651.2
NC_015588:2939747:294143929414392941846408Isoptericola variabilis 225 chromosome, complete genomeEndoribonuclease L-PSP3e-0650.8