Pre_GI: BLASTP Hits

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Query: NC_009664:63230:72808 Kineococcus radiotolerans SRS30216, complete genome

Start: 72808, End: 73572, Length: 765

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015145:3236445:327110632711063271798693Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator2e-31135
NC_008268:3418000:341942634194263420220795Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, GntR family2e-27122
NC_019940:2931500:295856629585662959279714Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator1e-1583.6
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR5e-1478.2
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR5e-1478.2
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator6e-1478.2
NC_009668:46010:612776127761927651Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceGntR family transcriptional regulator7e-1477.8
NC_014963:3175912:317591231759123176580669Terriglobus saanensis SP1PR4 chromosome, complete genomeGntR family transcriptional regulator6e-1374.7
NC_008543:323773:326602326602327249648Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, GntR family2e-1272.4
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family4e-1272
NC_012108:3824977:383239938323993833073675Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (GntR family protein)8e-1270.9
NC_008148:1859888:190316519031651903911747Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family9e-1270.5
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family1e-1170.1
NC_003047:3360000:337337633733763374068693Sinorhizobium meliloti 1021, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN2e-1169.3
NC_010511:1351000:135481613548161355487672Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator3e-1168.9
NC_014394:93344:110272110272110943672Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, GntR family6e-1168.2
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family1e-1067
NC_006350:1938631:197258619725861973254669Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative GntR-family transcriptional regulator1e-1067
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family2e-1066.2
NC_016147:1825827:183168018316801832387708Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator2e-1065.9
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family3e-1065.9
NC_014974:1076565:108378810837881084447660Thermus scotoductus SA-01 chromosome, complete genomeGntR family transcriptional regulator3e-1065.5
NC_013526:439813:465389465389466147759Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family6e-1064.7
NC_011959:131800:135215135215135898684Thermomicrobium roseum DSM 5159, complete genomeGntR-family transcriptional regulator6e-1064.7
NC_013093:2633000:263436726343672635044678Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family6e-1064.7
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family8e-1064.3
NC_017271:4193000:422159942215994222318720Xanthomonas campestris pv. raphani 756C chromosome, completetranscriptional regulator MdcY family1e-0963.9
NC_002678:5060670:510937251093725110070699Mesorhizobium loti MAFF303099, complete genometranscription regulator1e-0963.9
NC_020209:3874844:390377339037733904372600Pseudomonas poae RE*1-1-14, complete genomeGntR family transcriptional regulator1e-0963.9
NC_016803:3502749:351406835140683514757690Desulfovibrio desulfuricans ND132 chromosome, complete genomeGntR family transcriptional regulator1e-0963.9
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH1e-0963.9
NC_014931:3642779:365811536581153658783669Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, GntR family1e-0963.9
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator1e-0963.9
NC_009142:5647737:565529756552975655986690Saccharopolyspora erythraea NRRL 2338, complete genomepossible transcriptional regulator, GntR family1e-0963.5
NC_020911:3076791:308053030805303081186657Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator1e-0963.5
NC_016943:1560000:1576230157623015778101581Blastococcus saxobsidens DD2, complete genomeGntR family transcriptional regulator1e-0963.5
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family1e-0963.5
NC_015057:30743:366533665337351699Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequencetranscriptional regulator, GntR family2e-0963.2
NC_004578:6089958:610844861084486109113666Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, GntR family2e-0962.8
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein2e-0962.8
NC_020829:809457:813097813097813771675Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator2e-0962.8
NC_010676:897801:899693899693900427735Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, GntR family3e-0962.4
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family4e-0962
NC_010002:2293670:231700023170002317677678Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family4e-0962
NC_018691:761560:778164778164778892729Alcanivorax dieselolei B5 chromosome, complete genomeGntR-family transcriptional regulator4e-0962
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator3e-0962
NC_015563:2702787:271975127197512720407657Delftia sp. Cs1-4 chromosome, complete genomeGntR family transcriptional regulator6e-0961.2
NC_014632:336000:336166336166336810645Ilyobacter polytropus DSM 2926 chromosome, complete genomeGntR family transcriptional regulator7e-0961.2
NC_014119:977136:993862993862994566705Burkholderia sp. CCGE1002 chromosome chromosome 3, completetranscriptional regulator, GntR family7e-0960.8
NC_010505:3376322:339823433982343399088855Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, GntR family8e-0960.8
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family1e-0860.5
NC_007952:1293024:129591312959131296710798Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, GntR family1e-0860.1
NC_008541:2119883:213794521379452138670726Arthrobacter sp. FB24 chromosome 1, complete sequenceGntR domain protein1e-0860.1
NC_007963:1190847:121570212157021216370669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family1e-0860.1
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_008596:4104476:411410641141064114864759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein3e-0859.3
NC_011894:1499229:152381215238121524516705Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family3e-0858.9
NC_007434:2449721:247662724766272477433807Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, gntR family3e-0858.9
NC_015856:268034:267125267125268093969Collimonas fungivorans Ter331 chromosome, complete genomeGntR family transcriptional regulator4e-0858.5
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family4e-0858.5
NC_011894:6485500:649703764970376497684648Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family5e-0858.2
NC_011961:891815:896992896992897783792Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencetranscriptional regulater GntR family protein5e-0858.2
NC_004463:1369165:139094013909401391659720Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein6e-0858.2
NC_016642:2440070:247139724713972472071675Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator8e-0857.8
NC_007348:752692:758795758795759571777Ralstonia eutropha JMP134 chromosome 2, complete sequenceregulatory protein GntR, HTH:GntR, C-terminal8e-0857.8
NC_015458:2441435:246138524613852462053669Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator8e-0857.8
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR7e-0857.8
NC_003911:1791878:184090118409011841641741Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, GntR family7e-0857.8
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator7e-0857.8
NC_020911:18500:339013390134626726Octadecabacter antarcticus 307, complete genomeputative GntR family transcriptional regulator7e-0857.8
NC_016147:2964178:297771029777102978438729Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator7e-0857.8
NC_017191:3901914:390191439019143902573660Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator9e-0857.4
NC_006582:883922:909551909551910216666Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family9e-0857.4
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator1e-0757
NC_008596:3404832:342173434217343422429696Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein1e-0757
NC_014840:205723:261196261196261846651Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family1e-0756.6
NC_015656:1876627:188194718819471882705759Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR domain-containing protein2e-0756.2
NC_012108:5273289:528731952873195287996678Desulfobacterium autotrophicum HRM2, complete genomeputative transcriptional regulator2e-0756.2
NC_010170:1324758:133437413343741335066693Bordetella petrii, complete genomeprobable transcriptional regulator3e-0755.8
NC_013729:4835452:485750648575064858159654Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family3e-0755.8
NC_008392:666000:681288681288681968681Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, GntR family3e-0755.8
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein2e-0755.8
NC_009007:57804:634406344064171732Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequencetranscriptional regulator, GntR family3e-0755.5
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein3e-0755.5
NC_015727:1076927:109922410992241099961738Cupriavidus necator N-1 plasmid BB1p, complete sequenceGntR family transcriptional regulator3e-0755.5
NC_015724:339500:343813343813344547735Cupriavidus necator N-1 plasmid BB2p, complete sequenceGntR family transcriptional regulator4e-0755.5
NC_006361:5546232:555993755599375560635699Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator5e-0755.1
NC_004129:4993974:499868849986884999341654Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, GntR family5e-0755.1
NC_013037:6344532:634809263480926348730639Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, GntR family6e-0754.7
NC_008593:640000:651050651050651724675Clostridium novyi NT, complete genometranscriptional regulator, GntR family, putative6e-0754.7
NC_010511:7553703:755681175568117557539729Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator8e-0754.3
NC_015856:3536441:356124535612453561940696Collimonas fungivorans Ter331 chromosome, complete genomeregulatory protein GntR8e-0754.3
NC_014837:1144500:116444811644481165134687Pantoea sp. At-9b chromosome, complete genomeGntR family transcriptional regulator9e-0754.3
NC_014011:527681:541220541220541882663Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family1e-0653.5
NC_014541:643604:667525667525668166642Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, GntR family1e-0653.5
CP002207:1:256072560726266660Bacillus atrophaeus 1942, complete genomehypothetical protein2e-0653.1
NC_014639:1:256072560726266660Bacillus atrophaeus 1942 chromosome, complete genomehypothetical protein2e-0653.1
NC_016642:1913432:193922219392221939881660Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator2e-0653.1
NC_008254:611437:6283116283116295011191Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family2e-0653.1
NC_012856:1:147231472315487765Ralstonia pickettii 12D chromosome 1, complete genomeGntR domain protein2e-0653.1
NC_009667:1341000:136099613609961361676681Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceGntR family transcriptional regulator2e-0652.8
NC_013946:2854219:287009028700902870737648Meiothermus ruber DSM 1279 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_013131:7437831:744023174402317440941711Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, GntR family3e-0652.4
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator3e-0652.4
NC_015957:5082172:509492150949215095619699Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator4e-0652
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator4e-0652
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator4e-0652
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family4e-0652
NC_013501:1337489:134428613442861345053768Rhodothermus marinus DSM 4252, complete genomeGntR domain protein5e-0651.6
NC_013173:2261396:227212122721212272783663Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, GntR family5e-0651.6
NC_014841:131308:133188133188133841654Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, GntR family7e-0651.2
NC_011004:4183993:422052942205294221239711Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, GntR family7e-0651.2
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH6e-0651.2
NC_014364:815346:829594829594830268675Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, GntR family6e-0651.2
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator6e-0651.2
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family9e-0650.8
NC_012522:3038890:304323930432393043943705Rhodococcus opacus B4, complete genomeputative GntR family transcriptional regulator9e-0650.8
NC_009440:1045882:105601610560161056675660Metallosphaera sedula DSM 5348 chromosome, complete genomeGntR family transcriptional regulator1e-0550.8