Pre_GI: BLASTP Hits

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Query: NC_009664:4696961:4743785 Kineococcus radiotolerans SRS30216, complete genome

Start: 4743785, End: 4744369, Length: 585

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009664:4377777:438955243895524389737186Kineococcus radiotolerans SRS30216, complete genomehypothetical protein6e-22103
NC_013159:3858425:387137438713743871721348Saccharomonospora viridis DSM 43017, complete genomehypothetical protein2e-1375.9
NC_015953:3159234:317231231723123172647336Streptomyces sp. SirexAA-E chromosome, complete genomeputative Lsr2-like protein2e-1272.4
NC_009479:34001:391133911339457345Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmidconserved hypothetical protein, similar to LSR2 protein2e-1272
NC_013757:729986:766869766869767198330Geodermatophilus obscurus DSM 43160, complete genomeputative Lsr2-like protein2e-1272
NC_010408:79855:816781678514348Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1,LSR2-family protein3e-1271.6
NC_007333:3360000:337544033754403375772333Thermobifida fusca YX, complete genomeputative Lsr2-like protein5e-1270.9
NC_010407:3132683:313907731390773139412336Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative Lsr2-like protein5e-1270.9
NC_019673:359540:370326370326370673348Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-1168.6
NC_008269:577111:586055586055586396342Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencepossible lysyl tRNA synthetase-like protein3e-1168.2
NC_018681:5490963:552737855273785527713336Nocardia brasiliensis ATCC 700358 chromosome, complete genomeLSR2 protein6e-1167.4
NC_013757:1212308:124034012403401240675336Geodermatophilus obscurus DSM 43160, complete genomeiron-regulated LSR2 protein precursor1e-1066.6
NC_017955:3731480:378958737895873789943357Modestobacter marinus, complete genomelysyl tRNA synthetase-like protein1e-1066.2
NC_016109:5768000:580537758053775805706330Kitasatospora setae KM-6054, complete genomeputative LSR2-like protein2e-1065.9
NC_013757:3100515:310812831081283108463336Geodermatophilus obscurus DSM 43160, complete genomeiron-regulated LSR2 protein precursor2e-1065.5
NC_014158:233733:252079252079252414336Tsukamurella paurometabola DSM 20162 chromosome, complete genomeprotein lsr2 precursor2e-0962.4
NC_013235:2902617:292474329247432925084342Nakamurella multipartita DSM 44233, complete genomehypothetical protein3e-0961.6
NC_016111:1766010:181909318190931819431339Streptomyces cattleya NRRL 8057, complete genomeProtein lsr23e-0858.5
NC_016516:300846:316533316533316850318Propionibacterium acnes TypeIA2 P.acn33 chromosome, completehypothetical protein4e-0857.8
NC_016512:305240:325099325099325416318Propionibacterium acnes TypeIA2 P.acn17 chromosome, completehypothetical protein4e-0857.8
NC_016511:308244:325736325736326053318Propionibacterium acnes TypeIA2 P.acn31 chromosome, completehypothetical protein4e-0857.8
NC_014039:334892:352411352411352728318Propionibacterium acnes SK137 chromosome, complete genomehypothetical protein4e-0857.8
NC_006085:308567:326113326113326430318Propionibacterium acnes KPA171202, complete genomehypothetical protein4e-0857.8
NC_013757:3613438:362842536284253628754330Geodermatophilus obscurus DSM 43160, complete genomeLSR2-like protein7e-0857
NC_009953:3552738:355638835563883556738351Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein1e-0756.6
NC_009921:593665:612581612581612922342Frankia sp. EAN1pec, complete genomeputative lysyl tRNA synthetase-like protein2e-0755.5
NC_018681:5695343:569814956981495698484336Nocardia brasiliensis ATCC 700358 chromosome, complete genomeLSR2 protein3e-0754.7
NC_015683:2469481:247065524706552470975321Corynebacterium ulcerans BR-AD22 chromosome, complete genomemultifunctional histone-like protein5e-0754.3
NC_009921:8215996:822883182288318229172342Frankia sp. EAN1pec, complete genomeputative lysyl tRNA synthetase-like protein8e-0753.5
NC_016943:4692561:470411747041174704422306Blastococcus saxobsidens DD2, complete genomehypothetical protein9e-0753.5