Pre_GI Gene

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Host: NC_008269 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008269:577111 Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5771115781931083transposaseQuickGO ontologyBLASTP
578386578820435hypothetical protein
578836579561726hypothetical proteinBLASTP
579558580478921possible ATPase involved in chromosome partitioningQuickGO ontologyBLASTP
5820615832601200probable integraseQuickGO ontologyBLASTP
5835105846161107hypothetical proteinBLASTP
584906585412507possible helicaseQuickGO ontologyBLASTP
586055586396342possible lysyl tRNA synthetase-like proteinQuickGO ontologyBLASTP
586478586795318probable integration host factorQuickGO ontologyBLASTP
588096588926831probable transposaseQuickGO ontologyBLASTP
589036589572537possible transcriptional regulator TetR familyQuickGO ontologyBLASTP
5906135924601848probable exoribonuclease IIQuickGO ontologyBLASTP
592861593124264hypothetical proteinBLASTP
593371594018648possible DNA hydrolaseQuickGO ontologyBLASTP
5940265953181293adenylosuccinate synthetaseQuickGO ontologyBLASTP