Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4472173 Kineococcus radiotolerans SRS30216, complete genome

Start: 4472173, End: 4473933, Length: 1761

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019897:3057000:3080945308094530825191575Thermobacillus composti KWC4 chromosome, complete genomebeta-xylosidase1e-74281
NC_013406:4478000:4480008448000844815281521Paenibacillus sp. Y412MC10 chromosome, complete genomeXylan 1,4-beta-xylosidase3e-72273
NC_015690:4643869:4662435466243546639521518Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXylan 1,4-beta-xylosidase5e-68259
NC_016935:4367000:4399522439952244010391518Paenibacillus mucilaginosus 3016 chromosome, complete genomexylan 1,4-beta-xylosidase2e-67257
NC_015275:654959:6580996580996596551557Clostridium lentocellum DSM 5427 chromosome, complete genomeAlpha-N-arabinofuranosidase4e-67256
NC_015690:4361000:4384920438492043864551536Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXylan 1,4-beta-xylosidase3e-67256
NC_016935:4117485:4150989415098941525241536Paenibacillus mucilaginosus 3016 chromosome, complete genomexylan 1,4-beta-xylosidase3e-67256
NC_011898:3973627:4002835400283540043941560Clostridium cellulolyticum H10, complete genomeglycoside hydrolase family 437e-62238
NC_020210:1908000:1911362191136219130651704Geobacillus sp. GHH01, complete genomebeta-xylosidase3e-53209
NC_010995:3640913:3640913364091336426191707Cellvibrio japonicus Ueda107, complete genomebeta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43J6e-51202
NC_014655:2533929:2550158255015825517621605Leadbetterella byssophila DSM 17132 chromosome, complete genomealpha-N-arabinofuranosidase2e-50200
NC_015566:2328771:2341788234178823433951608Serratia sp. AS12 chromosome, complete genomeXylan 1,4-beta-xylosidase6e-49196
NC_015567:2328782:2341799234179923434061608Serratia sp. AS9 chromosome, complete genomeXylan 1,4-beta-xylosidase6e-49196
NC_019842:1847081:1857817185781718594181602Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein7e-49195
NC_020410:1781884:1795672179567217972731602Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completexylan beta-1,4-xylosidase2e-48194
NC_010407:1775227:1782515178251517841611647Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative xylosidase/arabinosidase3e-48193
NC_009725:1787262:1798284179828417998851602Bacillus amyloliquefaciens FZB42, complete genomeXynB3e-48193
NC_016514:506611:5080145080145096331620Enterobacter cloacae EcWSU1 chromosome, complete genomebeta-xylosidase2e-47191
AC_000091:273325:2860132860132876231611Escherichia coli W3110 DNA, complete genomepredicted xylosidase/arabinosidase5e-47189
NC_000913:272071:2860132860132876231611Escherichia coli K12, complete genomeCP4-6 prophage; predicted xylosidase/arabinosidase5e-47189
NC_010473:247429:2601172601172617271611Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; predicted xylosidase/arabinosidase5e-47189
NC_017188:1567000:1595784159578415973851602Bacillus amyloliquefaciens TA208 chromosome, complete genomexylan beta-1,4-xylosidase2e-46187
NC_017190:1832402:1845399184539918470001602Bacillus amyloliquefaciens LL3 chromosome, complete genomeXylan beta-1,4-xylosidase2e-46187
NC_017191:1568369:1597088159708815986891602Bacillus amyloliquefaciens XH7 chromosome, complete genomexylan 1,4-beta-xylosidase2e-46187
NC_014976:1:1476714767163681602Bacillus subtilis BSn5 chromosome, complete genomexylan beta-1,4-xylosidase4e-46186
NC_019896:2158223:2179284217928421808851602Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeXylan beta-1,4-xylosidase6e-46186
NC_020272:2077795:2102406210240621040071602Bacillus amyloliquefaciens IT-45, complete genomexylan 1,4-beta-xylosidase7e-46185
NC_000964:1873398:1887982188798218895831602Bacillus subtilis subsp. subtilis str. 168, complete genomexylan beta-1,4-xylosidase2e-45184
NC_020244:1875834:1894656189465618962571602Bacillus subtilis XF-1, complete genomexylan beta-1,4-xylosidase2e-45184
NC_014479:1831404:1842571184257118441721602Bacillus subtilis subsp. spizizenii str. W23 chromosome, completexylan beta-1,4-xylosidase2e-45184
NC_016047:1978312:1989096198909619906971602Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completebeta-xylosidase1e-45184
NC_014169:1909482:1918472191847219200911620Bifidobacterium longum subsp. longum JDM301 chromosome, completebeta-xylosidase3e-45183
NC_015732:2762424:2764176276417627657741599Spirochaeta caldaria DSM 7334 chromosome, complete genomeXylan 1,4-beta-xylosidase3e-45183
NC_010001:232976:2366172366172381551539Clostridium phytofermentans ISDg, complete genomeglycoside hydrolase family 431e-44181
NC_017195:1852935:1869957186995718715581602Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completebeta-xylosidase1e-44181
NC_020064:3517500:3523002352300235246811680Serratia marcescens FGI94, complete genomebeta-xylosidase1e-41171
NC_018720:311844:3269693269693286031635Bifidobacterium asteroides PRL2011 chromosome, complete genomebeta-1,4-xylosidase2e-41171
NC_012731:600518:6539566539566556351680Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative beta-1,4-xylosidase5e-41169
NC_017098:1589994:1591762159176215934171656Spirochaeta africana DSM 8902 chromosome, complete genomebeta-xylosidase1e-40168
NC_011283:4966471:4971367497136749730461680Klebsiella pneumoniae 342 chromosome, complete genomebeta-1,4-xylosidase1e-40168
NC_013850:4829455:4834353483435348360321680Klebsiella variicola At-22 chromosome, complete genomeXylan 1,4-beta-xylosidase1e-40168
NC_015663:4447984:4453918445391844555971680Enterobacter aerogenes KCTC 2190 chromosome, complete genomebeta-xylosidase1e-37158
NC_020181:969599:9814959814959831741680Enterobacter aerogenes EA1509E, complete genomeBeta-xylosidase1e-37158
NC_015389:616430:6600116600116616481638Coriobacterium glomerans PW2 chromosome, complete genomeXylan 1,4-beta-xylosidase3e-37156
NC_008618:1487000:1496402149640214980481647Bifidobacterium adolescentis ATCC 15703, complete genomexylan beta-1,4-xylosidase3e-37156
NC_015389:1977736:1991733199173319933911659Coriobacterium glomerans PW2 chromosome, complete genomeXylan 1,4-beta-xylosidase6e-33142
NC_014169:1909482:1910187191018719119531767Bifidobacterium longum subsp. longum JDM301 chromosome, completebeta-xylosidase5e-31136
NC_014655:614874:6300366300366315471512Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 435e-30132
NC_013406:3975512:3975512397551239769601449Paenibacillus sp. Y412MC10 chromosome, complete genomeXylan 1,4-beta-xylosidase2e-29131
NC_012997:2517130:2517130251713025187581629Teredinibacter turnerae T7901, complete genomeglycoside hydrolase family 43 domain protein5e-28126
NC_019968:552440:5524405524405541251686Prevotella dentalis DSM 3688 chromosome 2, complete sequencebeta-xylosidase1e-27124
NC_016631:4530000:4560310456031045618721563Granulicella mallensis MP5ACTX8 chromosome, complete genomexylan 1,4-beta-xylosidase2e-26120
NC_010995:4297361:4301188430118843028491662Cellvibrio japonicus Ueda107, complete genomebeta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43I2e-25117
NC_015732:2762424:2762424276242427639771554Spirochaeta caldaria DSM 7334 chromosome, complete genomeglycoside hydrolase family 433e-24113
NC_011886:3903343:3912306391230639138411536Arthrobacter chlorophenolicus A6, complete genomeglycoside hydrolase family 431e-23112
NC_015057:135585:1583791583791600401662Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequenceglycoside hydrolase family 431e-23112
NC_019897:2959002:2972923297292329764233501Thermobacillus composti KWC4 chromosome, complete genomebeta-xylosidase5e-23109
NC_004663:4729452:4736190473619047386252436Bacteroides thetaiotaomicron VPI-5482, complete genomeputative beta-xylosidase2e-22107
NC_015761:2982000:3007380300738030089301551Salmonella bongori NCTC 12419, complete genomeglycosyl hydrolase1e-1895.1
NC_016641:4727000:4738905473890547404161512Paenibacillus terrae HPL-003 chromosome, complete genomeglycoside hydrolase1e-1688.6
NC_014169:1909482:1911999191199919136421644Bifidobacterium longum subsp. longum JDM301 chromosome, completepyridine nucleotide-disulfide oxidoreductase3e-1687.4
NC_014655:2533929:2548503254850325500051503Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 435e-1686.7
NC_011898:1512213:1512213151221315144532241Clostridium cellulolyticum H10, complete genomeCarbohydrate binding family 61e-1585.1
NC_009614:29604:4086140861424441584Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycoside hydrolase3e-1583.6
NC_015977:3215770:3240247324024732417431497Roseburia hominis A2-183 chromosome, complete genomeCHU large protein7e-1582.8
NC_013730:3184602:3196730319673031981481419Spirosoma linguale DSM 74, complete genomeglycoside hydrolase family 431e-1481.6
NC_009614:2783698:2798727279872728006041878Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycoside hydrolase6e-1479.7
NC_015966:1145974:1152262115226211546552394Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeglycoside hydrolase family protein1e-1379
NC_009614:2783698:280067428006742801666993Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycoside hydrolase3e-1170.5
NC_016641:4727000:474061747406174740898282Paenibacillus terrae HPL-003 chromosome, complete genomexylosidase/arabinosidase2e-1067.8
NC_013526:530212:539196539196540116921Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeglycoside hydrolase family 434e-1067
NC_014829:1154520:1157473115747311585341062Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeglycoside hydrolase family 432e-0965.1
NC_009615:1553556:1557536155753615585401005Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycoside hydrolase family protein2e-0964.7
NC_014655:130636:1306361306361338483213Leadbetterella byssophila DSM 17132 chromosome, complete genomeglycoside hydrolase family 432e-0964.3
NC_016582:10159486:1018985610189856101915021647Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative glycosyl hydrolase/xylanase1e-0862
NC_017221:179272:1937611937611965802820Bifidobacterium longum subsp. longum KACC 91563 chromosome,xynb34e-0860.5
NC_004307:1936725:1947141194714119500172877Bifidobacterium longum NCC2705, complete genomepossible extracellular exo-xylanase5e-0860.1
NC_015067:2032271:2038755203875520415562802Bifidobacterium longum subsp. longum JCM 1217, complete genomeendo-1,4-beta-xylanase7e-0859.7
NC_015052:2071759:2078244207824420810452802Bifidobacterium longum subsp. infantis 157F, complete genomeendo-1,4-beta-xylanase6e-0859.7
NC_015514:1923428:1926115192611519277491635Cellulomonas fimi ATCC 484 chromosome, complete genomeglycoside hydrolase family 431e-0758.9
NC_014656:1956277:1964604196460419673272724Bifidobacterium longum subsp. longum BBMN68 chromosome, completexynb31e-0758.9
NC_010816:1989868:1998435199843520011402706Bifidobacterium longum DJO10A, complete genomeendo-1,4-beta-xylanase/Beta-xylosidase1e-0758.5
NC_012522:5987644:5989253598925359906921440Rhodococcus opacus B4, complete genomeputative endo-1,5-alpha-L-arabinanase1e-0758.5
NC_011898:1512213:1516222151622215177511530Clostridium cellulolyticum H10, complete genomeCarbohydrate binding family 62e-0654.7
NC_013410:2179342:2179342217934221814202079Fibrobacter succinogenes subsp. succinogenes S85 chromosome,glycoside hydrolase family protein3e-0654.3
NC_013745:104385:1055371055371070691533Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, completeglycoside hydrolase family 433e-0653.9
NC_014623:7482229:7537533753753375394101878Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeglycoside hydrolase4e-0653.5
NC_017079:4550406:4555094455509445561461053Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative glycoside hydrolase5e-0653.5