Pre_GI Gene

Some Help

Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:2179342 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
217934221814202079glycoside hydrolase family proteinQuickGO ontologyBLASTP
21815372182010474hypothetical protein
218200021832951296HipA domain-containing proteinQuickGO ontologyBLASTP
21833052183721417transcriptional regulator XRE familyQuickGO ontologyBLASTP
218385921849381080lipoproteinQuickGO ontologyBLASTP
21850022185910909hypothetical protein
21859222186275354hypothetical protein
218649221891792688hypothetical proteinBLASTP
218917921924633285UvrDREP helicaseQuickGO ontologyBLASTP
219256221945171956hypothetical proteinBLASTP
21947862194980195hypothetical protein
21950492195594546hypothetical protein
21956192196068450hypothetical proteinBLASTP
219617721996743498family 2 glycoside hydrolaseQuickGO ontologyBLASTP
219990122029003000alpha-L-fucosidaseQuickGO ontologyBLASTP
220310022047581659carbohydrate binding family 6QuickGO ontologyBLASTP
220514022070111872carbohydrate binding family 6QuickGO ontologyBLASTP