Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4424873 Kineococcus radiotolerans SRS30216, complete genome

Start: 4424873, End: 4425499, Length: 627

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009921:5371483:537465553746555375305651Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family7e-1890.5
NC_009921:1813500:184397718439771844687711Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family5e-1581.3
NC_015957:7249873:726786572678657268458594Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR1e-1479.3
NC_014323:3976351:400574140057414006313573Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein8e-1477
NC_009664:4347718:435952443595244360177654Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, TetR family2e-1375.5
NC_012704:696374:705911705911706603693Corynebacterium kroppenstedtii DSM 44385, complete genometranscriptional regulator, TetR family3e-1375.1
NC_008699:2294361:233821723382172338930714Nocardioides sp. JS614, complete genomeregulatory protein, TetR3e-1375.1
NC_015957:7348269:735711373571137357745633Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR2e-1272.4
NC_017093:5225864:523639552363955237063669Actinoplanes missouriensis 431, complete genomeputative TetR-family transcriptional regulator4e-1271.2
NC_014323:3976351:400723340072334007799567Herbaspirillum seropedicae SmR1 chromosome, complete genomeTetR family transcription regulator protein6e-1270.9
NC_007508:5093365:510796051079605108592633Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative transcriptional regulator, TetR family7e-1270.5
NC_012489:3503632:350485135048513505480630Gemmatimonas aurantiaca T-27, complete genomeTetR family transcriptional regulator1e-1169.7
NC_008705:27434:515445154452149606Mycobacterium sp. KMS, complete genometranscriptional regulator, TetR family2e-1168.9
NC_008146:20047:442044420444809606Mycobacterium sp. MCS, complete genometranscriptional regulator, TetR family2e-1168.9
NC_014310:1750817:175724317572431757839597Ralstonia solanacearum PSI07 megaplasmid, complete sequenceTetR family transcriptional regulator3e-1168.6
NC_014307:1131241:114012811401281140727600Ralstonia solanacearum CFBP2957 chromosome, complete genomeTetR family transcriptional regulator4e-1168.2
NC_016582:7699420:770664677066467707239594Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator1e-1066.6
NC_014666:1117000:113313811331381133842705Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR2e-1065.9
NC_006361:4597718:462450046245004625183684Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator4e-1064.7
NC_015709:1769806:178762117876211788307687Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeTetR family transcriptional regulator7e-1063.9
NC_003155:622993:653742653742654326585Streptomyces avermitilis MA-4680, complete genomeTetR-family transcriptional regulator8e-1063.5
NC_015138:4205986:422692442269244227514591Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeregulatory protein TetR1e-0963.2
NC_015434:2683631:269688526968852697439555Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator1e-0963.2
NC_015434:666692:702511702511703194684Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator2e-0962.8
NC_013929:5850599:586993558699355870588654Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator2e-0962.8
NC_013947:6221877:622643162264316226991561Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family2e-0962.4
NC_014666:2629799:264302426430242643593570Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR3e-0961.6
NC_016113:1143580:116248011624801163136657Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencetranscriptional regulator5e-0961.2
NC_016582:11734963:117504131175041311750997585Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator5e-0961.2
NC_009953:2867864:289295728929572893628672Salinispora arenicola CNS-205 chromosome, complete genomeTetR family transcriptional regulator3e-0858.9
NC_011365:1596652:161991016199101620509600Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeTetR family transcriptional regulator2e-0858.9
NC_013521:2193203:219552721955272196075549Sanguibacter keddieii DSM 10542, complete genometranscriptional regulator, tetR family3e-0858.5
NC_003888:4523500:452350245235024524395894Streptomyces coelicolor A3(2), complete genometetR-family transcriptional regulator3e-0858.5
NC_015656:2900730:291491029149102915503594Frankia symbiont of Datisca glomerata chromosome, complete genomeregulatory protein TetR5e-0857.8
NC_007492:3180480:319538131953813195968588Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family6e-0857.4
NC_008278:613329:625168625168625779612Frankia alni ACN14a, complete genomeputative tetR-family transcriptional regulator2e-0756.2
NC_010508:2776283:278996127899612790557597Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencetranscriptional regulator, TetR family2e-0756.2
NC_013093:3068486:311332431133243113875552Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, TetR family2e-0755.5
NC_011365:1171536:117691611769161177497582Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeTetR family transcriptional regulator3e-0755.5
NC_013739:5535945:554067855406785541244567Conexibacter woesei DSM 14684, complete genometranscriptional regulator, TetR family3e-0755.5
NC_015434:1173794:119680711968071197418612Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator5e-0754.3
NC_010688:3515885:352608335260833526709627Xanthomonas campestris pv. campestris, complete genometranscriptional regulator, TetR family5e-0754.3
NC_003902:1416000:142181514218151422441627Xanthomonas campestris pv. campestris str. ATCC 33913, completetranscriptional regulator5e-0754.3
NC_007164:380000:392463392463393029567Corynebacterium jeikeium K411, complete genomeputative transcriptional regulator (TetR family)1e-0653.1
NC_015951:107360:117786117786118340555Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeregulatory protein TetR2e-0652.4
NC_009921:4903688:490439949043994905013615Frankia sp. EAN1pec, complete genometranscriptional regulator, TetR family2e-0652.4
NC_015566:3417951:342511634251163425712597Serratia sp. AS12 chromosome, complete genomeregulatory protein TetR6e-0650.8
NC_017955:343931:358000358000358650651Modestobacter marinus, complete genomeTetR family transcriptional regulator7e-0650.8
NC_015580:3411802:342310334231033423645543Novosphingobium sp. PP1Y, complete genomeTetR family transcriptional regulator7e-0650.4