Pre_GI: BLASTP Hits

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Query: NC_009664:3969609:3973983 Kineococcus radiotolerans SRS30216, complete genome

Start: 3973983, End: 3974843, Length: 861

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013521:1976331:197885019788501979704855Sanguibacter keddieii DSM 10542, complete genomeshikimate 5-dehydrogenase1e-34146
NC_015563:2702787:270994927099492710788840Delftia sp. Cs1-4 chromosome, complete genomeShikimate dehydrogenase6e-1891.7
NC_015387:1091403:111343611134361114248813Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeShikimate dehydrogenase7e-1891.3
NC_016790:1259356:129968812996881300530843Corynebacterium diphtheriae VA01 chromosome, complete genomeshikimate 5-dehydrogenase4e-1789
NC_016787:1276983:132230613223061323148843Corynebacterium diphtheriae HC03 chromosome, complete genomeshikimate 5-dehydrogenase4e-1789
NC_016782:1316467:133288813328881333730843Corynebacterium diphtheriae 241 chromosome, complete genomeshikimate 5-dehydrogenase7e-1788.2
NC_016786:1316436:133285813328581333700843Corynebacterium diphtheriae HC01 chromosome, complete genomeshikimate 5-dehydrogenase7e-1788.2
NC_016783:1313008:135718813571881358030843Corynebacterium diphtheriae INCA 402 chromosome, complete genomeshikimate 5-dehydrogenase6e-1788.2
NC_016788:1315877:133229913322991333141843Corynebacterium diphtheriae HC04 chromosome, complete genomeshikimate 5-dehydrogenase6e-1788.2
NC_016802:1317365:133378713337871334629843Corynebacterium diphtheriae HC02 chromosome, complete genomeshikimate 5-dehydrogenase6e-1788.2
NC_002935:1315019:135919613591961360065870Corynebacterium diphtheriae NCTC 13129, complete genomeshikimate 5-dehydrogenase7e-1787.8
NC_016785:1297208:131447113144711315313843Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeshikimate 5-dehydrogenase1e-1687
NC_016801:1361597:137801613780161378858843Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeshikimate 5-dehydrogenase1e-1687
NC_016800:1344189:136145213614521362294843Corynebacterium diphtheriae BH8 chromosome, complete genomeshikimate 5-dehydrogenase1e-1687
NC_016799:1343020:138834013883401389182843Corynebacterium diphtheriae 31A chromosome, complete genomeshikimate 5-dehydrogenase1e-1687
NC_016789:1334514:137869613786961379538843Corynebacterium diphtheriae PW8 chromosome, complete genomeshikimate 5-dehydrogenase1e-1687
NC_014804:341663:351086351086351904819Thermococcus barophilus MP chromosome, complete genomeshikimate 5-dehydrogenase I alpha9e-1580.9
NC_008044:3024125:302898630289863029816831Silicibacter sp. TM1040, complete genomeshikimate 5-dehydrogenase9e-1580.9
NC_014355:399938:404381404381405235855Candidatus Nitrospira defluvii, complete genomeshikimate 5-dehydrogenase5e-1478.2
NC_009785:1414892:141729314172931418150858Streptococcus gordonii str. Challis substr. CH1, complete genomeshikimate 5-dehydrogenase1e-1377.4
NC_011979:3712845:373034837303483731220873Geobacter sp. FRC-32, complete genomeshikimate 5-dehydrogenase2e-1376.6
NC_009922:42696:466674666747527861Alkaliphilus oremlandii OhILAs, complete genomeshikimate 5-dehydrogenase4e-1375.5
NC_005042:1719055:173579817357981736700903Prochlorococcus marinus subsp. marinus str. CCMP1375, completeShikimate 5-dehydrogenase6e-1375.1
NC_015474:252390:275352275352276173822Pyrococcus sp. NA2 chromosome, complete genomeshikimate 5-dehydrogenase1e-1273.9
NC_012803:1373500:137353013735301374453924Micrococcus luteus NCTC 2665, complete genomeshikimate 5-dehydrogenase1e-1273.6
NC_010634:2810815:281667928166792817497819Yersinia pseudotuberculosis PB1/+, complete genomeshikimate dehydrogenase substrate binding subunit3e-1272.8
NC_006155:2893802:289966628996662900484819Yersinia pseudotuberculosis IP 32953, complete genomeshikimate 5-dehydrogenase3e-1272.8
NC_015977:2807782:284480328448032845672870Roseburia hominis A2-183 chromosome, complete genomeshikimate 5-dehydrogenase3e-1272.4
NC_009952:3596399:363194536319453632781837Dinoroseobacter shibae DFL 12, complete genomeshikimate dehydrogenase3e-1272.4
NC_007181:141299:149768149768150559792Sulfolobus acidocaldarius DSM 639, complete genomeshikimate/quinate 5-dehydrogenase5e-1272
NC_014122:549932:588069588069588902834Methanocaldococcus infernus ME chromosome, complete genomeshikimate 5-dehydrogenase5e-1271.6
NC_007802:179780:187014187014187850837Jannaschia sp. CCS1, complete genomeShikimate 5-dehydrogenase1e-1170.9
NC_019977:253895:258493258493259314822Methanomethylovorans hollandica DSM 15978, complete genomeshikimate 5-dehydrogenase2e-1170.1
NC_015573:1979202:198059219805921981548957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeShikimate dehydrogenase2e-1169.7
NC_008593:2281896:230243323024332303245813Clostridium novyi NT, complete genomeshikimate 5-dehydrogenase3e-1169.3
NC_007955:2074844:209948120994812100290810Methanococcoides burtonii DSM 6242, complete genomeshikimate 5-dehydrogenase2e-1066.6
NC_012880:1585255:158825915882591589128870Dickeya dadantii Ech703, complete genomeShikimate dehydrogenase substrate binding domain protein2e-1066.6
NC_004741:1792442:179361417936141794480867Shigella flexneri 2a str. 2457T, complete genomeshikimate 5-dehydrogenase3e-1066.2
NC_014614:2500301:250359825035982504434837Clostridium sticklandii, complete genomeShikimate dehydrogenase3e-1065.9
NC_000868:416958:432656432656433450795Pyrococcus abyssi GE5, complete genomeshikimate 5-dehydrogenase3e-1065.9
NC_014727:95875:953469534695906561Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,shikimate 5-dehydrogenase and fad-dependent oxidase domain4e-1065.5
NC_014221:554764:561386561386562216831Truepera radiovictrix DSM 17093 chromosome, complete genomeshikimate 5-dehydrogenase4e-1065.5
NC_012779:3176820:323099232309923231780789Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-1065.5
NC_015425:2528549:255259725525972553409813Clostridium botulinum BKT015925 chromosome, complete genomeshikimate 5-dehydrogenase5e-1065.1
NC_015580:1302000:132602613260261326904879Novosphingobium sp. PP1Y, complete genomeshikimate 5-dehydrogenase2e-0963.2
NC_015518:1095879:110422611042261105014789Acidianus hospitalis W1 chromosome, complete genomeShikimate dehydrogenase substrate binding domain-containing protein4e-0962
NC_012108:2542328:254495725449572545772816Desulfobacterium autotrophicum HRM2, complete genomeAroE19e-0961.2
NC_015151:1403500:140835914083591409162804Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeshikimate dehydrogenase substrate binding domain protein1e-0860.8
NC_008343:2389710:239037423903742391243870Granulibacter bethesdensis CGDNIH1, complete genomeshikimate 5-dehydrogenase2e-0860.1
NC_001263:72681:783807838079201822Deinococcus radiodurans R1 chromosome 1, complete sequenceshikimate 5-dehydrogenase2e-0860.1
NC_008010:105665:115638115638116507870Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceShikimate dehydrogenase substrate binding-like2e-0859.7
NC_009440:1810301:181730518173051818123819Metallosphaera sedula DSM 5348 chromosome, complete genomeshikimate dehydrogenase5e-0858.5
NC_017513:1845069:186073918607391861548810Neisseria meningitidis G2136 chromosome, complete genomeshikimate 5-dehydrogenase6e-0858.2
NC_015519:1888917:189192318919231892795873Tepidanaerobacter sp. Re1 chromosome, complete genomeShikimate dehydrogenase1e-0757.4
NC_017518:2041282:205627220562722057081810Neisseria meningitidis NZ-05/33 chromosome, complete genomeshikimate 5-dehydrogenase1e-0757.4
NC_017514:1885154:190204319020431902852810Neisseria meningitidis M01-240149 chromosome, complete genomeshikimate 5-dehydrogenase1e-0757.4
NC_010120:1814592:183351518335151834324810Neisseria meningitidis 053442, complete genomeshikimate dehydrogenase1e-0757.4
NC_003112:364869:364869364869365678810Neisseria meningitidis MC58, complete genomeshikimate 5-dehydrogenase2e-0757
NC_017516:364404:364404364404365213810Neisseria meningitidis H44/76 chromosome, complete genomeshikimate 5-dehydrogenase2e-0757
NC_009512:2238437:225730122573012258122822Pseudomonas putida F1, complete genomeShikimate dehydrogenase substrate binding, N-terminal domain protein1e-0757
NC_002947:4293252:429723042972304298069840Pseudomonas putida KT2440, complete genomeshikimate 5-dehydrogenase3e-0755.8
NC_003116:2063500:207914620791462079961816Neisseria meningitidis Z2491, complete genomeshikimate dehydrogenase3e-0755.8
NC_008767:1829500:184875318487531849562810Neisseria meningitidis FAM18, complete genomeshikimate dehydrogenase3e-0755.8
NC_017512:1824966:184383718438371844646810Neisseria meningitidis WUE 2594, complete genomeshikimate dehydrogenase3e-0755.8
NC_013016:1801000:181996818199681820777810Neisseria meningitidis alpha14 chromosome, complete genomeshikimate 5-dehydrogenase4e-0755.5
NC_013169:1290000:1291110129111012921141005Kytococcus sedentarius DSM 20547, complete genomeshikimate 5-dehydrogenase3e-0652.8
NC_014960:216965:223354223354224232879Anaerolinea thermophila UNI-1, complete genomeshikimate dehydrogenase3e-0652.8
NC_016932:832748:837471837471838286816Corynebacterium pseudotuberculosis 316 chromosome, complete genomeshikimate 5-dehydrogenase5e-0652