Pre_GI: BLASTP Hits

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Query: NC_009439:3535152:3536178 Pseudomonas mendocina ymp, complete genome

Start: 3536178, End: 3537029, Length: 852

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012560:1965251:196687219668721967723852Azotobacter vinelandii DJ, complete genomePhosphonate ABC transporter, substrate-binding protein2e-138491
NC_021150:1965264:196688519668851967736852Azotobacter vinelandii CA6, complete genomePhosphonate ABC transporter, substrate-binding protein2e-138491
NC_007492:2771021:278739127873912788242852Pseudomonas fluorescens PfO-1, complete genomePhosphonate-binding periplasmic protein3e-131467
NC_010501:4787963:480643248064324807286855Pseudomonas putida W619, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein7e-127453
NC_007760:535825:541082541082541933852Anaeromyxobacter dehalogenans 2CP-C, complete genomeABC phosphonate-binding periplasmic protein4e-93341
NC_018664:1:162511625117177927Clostridium acidurici 9a chromosome, complete genomeABC phosphonate transporter periplasmic phosphonate-binding protein5e-56218
NC_007513:1126914:114927211492721150195924Synechococcus sp. CC9902, complete genomePhosphonate-binding periplasmic protein3e-46185
NC_005070:1144777:116180611618061162726921Synechococcus sp. WH 8102, complete genomePutative phosphonate binding protein for ABC transporter4e-46185
NC_005071:835005:855102855102856001900Prochlorococcus marinus str. MIT 9313, complete genomePutative phosphonate binding protein for ABC transporter2e-44179
NC_010334:3040589:305999230599923060846855Shewanella halifaxensis HAW-EB4, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein6e-39161
NC_015422:2078618:208943220894322090292861Alicycliphilus denitrificans K601 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate-binding protein3e-32139
NC_008740:1414926:143625514362551437118864Marinobacter aquaeolei VT8, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein1e-30133
NC_009659:3384997:340802434080243408884861Janthinobacterium sp. Marseille chromosome, complete genomephosphonate ABC-type transport system substrate-binding protein2e-29129
NC_009138:3153576:317292331729233173783861Herminiimonas arsenicoxydans, complete genomephosphite transport system binding protein ptxB precursor2e-29129
NC_009649:16907:358023580236665864Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,ABC-type phosphate/phosphonate transport system, periplasmic component5e-28125
NC_012811:1138897:114185211418521142724873Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative phosphonate transport system substrate-binding protein2e-27122
NC_019902:831911:857637857637858536900Thioalkalivibrio nitratireducens DSM 14787, complete genomePhosphonate ABC transporter phosphate-binding periplasmic component6e-25114
NC_013744:159861:177327177327178217891Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completephosphonate ABC transporter, periplasmic phosphonate-binding protein1e-24113
NC_010002:2933909:294487329448732945751879Delftia acidovorans SPH-1, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein1e-24113
NC_007973:3240866:325173132517313252609879Ralstonia metallidurans CH34 chromosome 1, complete sequencePhosphonate-binding periplasmic protein1e-24113
NC_006395:217139:243801243801244676876Haloarcula marismortui ATCC 43049 plasmid pNG700, completephosphate ABC transporter phosphate-binding protein4e-24112
NC_008312:7635217:763521776352177636134918Trichodesmium erythraeum IMS101, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein7e-23107
NC_007298:2769525:280262928026292803507879Dechloromonas aromatica RCB, complete genomePhosphonate-binding periplasmic protein2e-1893.2
NC_015563:4773415:479700147970014797888888Delftia sp. Cs1-4 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate-binding protein3e-1789.4
NC_011662:386162:439011439011439913903Thauera sp. MZ1T, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein2e-1583.2
NC_018604:2253539:225468822546882255542855Brachyspira pilosicoli WesB complete genomeABC-type phosphate/phosphonate transport system,periplasmic component8e-1477.8
NC_013939:1460142:147066214706621471519858Deferribacter desulfuricans SSM1, complete genomephosphate/phosphonate ABC transporter substrate-binding protein1e-1377.4
NC_014150:2994000:299659029965902997444855Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein2e-1376.3
NC_015425:2528549:2538760253876025406521893Clostridium botulinum BKT015925 chromosome, complete genomemethyl-accepting chemotaxis protein5e-1375.1
NC_010511:3233884:323388432338843234813930Methylobacterium sp. 4-46 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate binding protein6e-1374.7
NC_007907:4692336:471060247106024711510909Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1273.9
NC_008593:2281896:2288423228842322903271905Clostridium novyi NT, complete genomemethyl-accepting chemotaxis protein1e-1273.9
NC_011830:1288984:129906312990631300052990Desulfitobacterium hafniense DCB-2, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein2e-1272.8
NC_011983:760113:760113760113761018906Agrobacterium radiobacter K84 chromosome 2, complete genomephosphonate ABC transporter4e-1168.6
NC_009138:467268:484573484573485478906Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein, putative ABC-type phosphate/phosphonate transport system5e-1168.6
NC_007907:5185510:524762252476225248572951Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1067.4
NC_013173:2261396:228655022865502287473924Desulfomicrobium baculatum DSM 4028, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein2e-1066.6
NC_016935:4233223:430501443050144305832819Paenibacillus mucilaginosus 3016 chromosome, complete genomephosphonate ABC transporter substrate-binding protein1e-0964.3
NC_015690:4469775:454871045487104549528819Paenibacillus mucilaginosus KNP414 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate-binding protein2e-0963.5
NC_015224:1641819:165641516564151657344930Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative substrate-binding periplasmic transport protein8e-0961.2
NC_009714:1084000:110520311052031105994792Campylobacter hominis ATCC BAA-381, complete genomehypothetical protein8e-0961.2
NC_008800:3123495:312934531293453130274930Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative substrate-binding periplasmic transport protein1e-0860.5
NC_012811:317308:316442316442317311870Methylobacterium extorquens AM1 megaplasmid, complete sequencehypothetical protein2e-0860.1
NC_013131:621366:636591636591637448858Catenulispora acidiphila DSM 44928, complete genomehypothetical protein6e-0858.2
NC_004193:375416:629961629961630923963Oceanobacillus iheyensis HTE831, complete genomealkylphosphonate ABC tranporter phosphate-binding protein8e-0857.8
NC_010002:4930865:493205649320564932904849Delftia acidovorans SPH-1, complete genomehypothetical protein2e-0756.6
NC_007925:4294472:429698142969814297946966Rhodopseudomonas palustris BisB18, complete genomePhosphonate-binding periplasmic protein3e-0756.2
NC_013941:5013695:5027049502704950280651017Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate ABC transporter substrate-binding protein2e-0653.1
NC_007384:4530000:4542148454214845431641017Shigella sonnei Ss046, complete genomeperiplasmic binding protein component of Pn transporter3e-0652.8
AC_000091:4313167:4328014432801443290301017Escherichia coli W3110 DNA, complete genomephosphonate/organophosphate ester transporter subunit3e-0652.8
NC_007613:4156841:4172539417253941735551017Shigella boydii Sb227, complete genomeperiplasmic binding protein component of Pn transporter3e-0652.8
CU928160:4395156:4407196440719644082121017Escherichia coli IAI1 chromosome, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily3e-0652.8
NC_000913:4307471:4321359432135943223751017Escherichia coli K12, complete genomephosphonate/organophosphate ester transporter subunit3e-0652.8
CP002516:4431235:4436246443624644372621017Escherichia coli KO11, complete genomephosphonate ABC transporter, periplasmic phosphonate binding protein3e-0652.8
CU928145:4695932:4708082470808247090981017Escherichia coli 55989 chromosome, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily3e-0652.8
NC_009801:4643000:4655233465523346562491017Escherichia coli E24377A, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein3e-0652.8
CP002185:4566150:4581774458177445827901017Escherichia coli W, complete genomephosphonate/organophosphate ester transporter subunit3e-0652.8
NC_009800:4332229:4347854434785443488701017Escherichia coli HS, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein3e-0652.8
NC_013008:5196080:5209444520944452104601017Escherichia coli O157:H7 str. TW14359 chromosome, complete genomephosphonate ABC transporter substrate-binding protein3e-0652.8
NC_011353:5240020:5253383525338352543991017Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate-binding protein3e-0652.8
NC_002655:5194804:5208168520816852091841017Escherichia coli O157:H7 EDL933, complete genomeperiplasmic binding protein component of Pn transporter3e-0652.8
NC_002695:5164819:5178183517818351791991017Escherichia coli O157:H7 str. Sakai, complete genomeperiplasmic binding protein component of Pn transporter3e-0652.8
NC_011748:4695932:4708082470808247090981017Escherichia coli 55989, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily3e-0652.8
NC_010473:4409492:4421721442172144227371017Escherichia coli str. K-12 substr. DH10B, complete genomephosphonate/organophosphate ester transporter subunit; periplasmic binding component of ABC superfamily3e-0652.8
AP010958:5022196:5034417503441750354331017Escherichia coli O103:H2 str. 12009 DNA, complete genomephosphonate/organophosphate ester transporter subunit PhnD3e-0652.8
NC_007606:3842708:3848776384877638497921017Shigella dysenteriae Sd197, complete genomeperiplasmic binding protein component of Pn transporter3e-0652.8
NC_012967:4289929:4302150430215043031661017Escherichia coli B str. REL606 chromosome, complete genomephosphonate/organophosphate ester transporter subunit3e-0652.8
NC_012947:4106031:4110942411094241119581017Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphonate ABC transporter substrate-binding protein3e-0652.8
NC_010498:4656716:4668784466878446698001017Escherichia coli SMS-3-5, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein3e-0652.8
NC_010468:4305105:4309617430961743106331017Escherichia coli ATCC 8739, complete genomephosphonate ABC transporter, periplasmic phosphonate binding protein3e-0652.8
NC_011750:4719477:4731623473162347326391017Escherichia coli IAI39 chromosome, complete genomephosphonate/organophosphate ester ABC transporter periplasmic binding protein3e-0652.8
NC_011751:4795928:4809389480938948104051017Escherichia coli UMN026 chromosome, complete genomephosphonate/organophosphate ester ABC transporter periplasmic binding protein3e-0652.8
NC_016902:4431235:4436246443624644372621017Escherichia coli KO11FL chromosome, complete genomephosphonate ABC transporter substrate-binding protein3e-0652.8
NC_011415:4582388:4594610459461045956261017Escherichia coli SE11 chromosome, complete genomephosphonate ABC transporter substrate binding component3e-0652.8
NC_011741:4395156:4407196440719644082121017Escherichia coli IAI1 chromosome, complete genomephosphonate/organophosphate ester ABC transporter periplasmic-binding protein3e-0652.8
NC_012759:4247865:4260094426009442611101017Escherichia coli BW2952 chromosome, complete genomephosphonate/organophosphate ester transporter subunit3e-0652.8
NC_013353:5022196:5034417503441750354331017Escherichia coli O103:H2 str. 12009, complete genomephosphonate/organophosphate ester transporter subunit PhnD3e-0652.8
NC_013364:5040268:5055937505593750569531017Escherichia coli O111:H- str. 11128, complete genomephosphonate/organophosphate ester transporter subunit PhnD3e-0652.8
NC_016822:4686971:4699075469907547000911017Shigella sonnei 53G, complete genomeperiplasmic binding protein component of Pn transporter3e-0652.8
NC_008253:4541915:4555934455593445569501017Escherichia coli 536, complete genomePhnD protein3e-0652.4
NC_011742:4569683:4584403458440345854191017Escherichia coli S88 chromosome, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily4e-0652.4
NC_008563:4656000:4669875466987546708911017Escherichia coli APEC O1, complete genomePhnD, subunit of alkylphosphonate ABC transporter4e-0652.4
NC_004431:4867648:4882368488236848833841017Escherichia coli CFT073, complete genomePhosphonates-binding periplasmic protein precursor5e-0652
NC_009720:4367584:438554843855484386516969Xanthobacter autotrophicus Py2, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein7e-0651.6