Pre_GI: BLASTP Hits

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Query: NC_009439:3485000:3504406 Pseudomonas mendocina ymp, complete genome

Start: 3504406, End: 3505050, Length: 645

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009436:2685910:268591026859102686578669Enterobacter sp. 638, complete genomehypothetical protein9e-45179
CP002797:1960000:196450419645041965169666Escherichia coli NA114, complete genomehypothetical protein1e-43176
NC_012967:1967675:196894819689481969613666Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-43176
NC_012214:474359:490333490333490890558Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein YecA8e-31133
NC_013971:3296272:329712532971253297703579Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-29128
NC_013961:441719:473618473618474175558Erwinia amylovora, complete genomeUncharacterized protein yecA3e-29128
NC_010501:1286971:130724613072461307800555Pseudomonas putida W619, complete genomeyecA family protein1e-22106
NC_016002:3077648:309579030957903096458669Pseudogulbenkiania sp. NH8B, complete genomeYecA family protein7e-1890.5
NC_015731:2460248:247640724764072477105699Nitrosomonas sp. Is79A3 chromosome, complete genomeyecA family protein2e-1685.5
NC_013959:2801557:281841028184102819156747Sideroxydans lithotrophicus ES-1 chromosome, complete genomeyecA family protein8e-1373.6
NC_008752:3217695:322993332299333230631699Acidovorax avenae subsp. citrulli AAC00-1, complete genomeyecA family protein1e-1273.2
NC_008752:2936933:297311329731132973811699Acidovorax avenae subsp. citrulli AAC00-1, complete genomeyecA family protein1e-1273.2
NC_008686:95326:107337107337108014678Paracoccus denitrificans PD1222 chromosome 1, complete sequenceyecA family protein2e-1272.4
NC_010002:3399770:341227834122783413081804Delftia acidovorans SPH-1, complete genomeyecA family protein3e-1272
NC_007507:101887:122512122512123210699Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,hypothetical protein4e-1271.2
NC_014758:1992683:2012812201281220154092598Calditerrivibrio nitroreducens DSM 19672 chromosome, completeprotein translocase subunit seca4e-0858.2
NC_010571:2041277:2057125205712520601393015Opitutus terrae PB90-1, complete genomepreprotein translocase, SecA subunit3e-0755.5
NC_019897:128610:1940631940631965822520Thermobacillus composti KWC4 chromosome, complete genomePreprotein translocase subunit SecA5e-0754.7
NC_010524:1005355:100631710063171007081765Leptothrix cholodnii SP-6, complete genomeyecA family protein6e-0754.3
NC_011768:3385719:3414547341454734163761830Desulfatibacillum alkenivorans AK-01, complete genomeSEC-C motif domain protein1e-0653.1
NC_008576:4130000:4144244414424441469492706Magnetococcus sp. MC-1, complete genomepreprotein translocase, SecA subunit1e-0653.1
NC_002937:255790:273943273943274431489Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeSEC-C motif domain protein2e-0652.8
NC_014924:725380:7253807253807281182739Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomepreprotein translocase, SecA subunit2e-0652.4
NC_007912:1111093:1111093111109311138462754Saccharophagus degradans 2-40, complete genomeTonB-dependent receptor2e-0652.4
NC_014721:508000:5186055186055211512547Caldicellulosiruptor kristjanssonii 177R1B chromosome, completepreprotein translocase, seca subunit2e-0652.4
NC_015949:1957185:1967416196741619699622547Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeProtein translocase subunit secA2e-0652.4
NC_015510:4113505:4128738412873841320643327Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeprotein translocase subunit secA3e-0652
NC_009437:1481064:1491520149152014940662547Caldicellulosiruptor saccharolyticus DSM 8903, complete genomepreprotein translocase, SecA subunit3e-0652
NC_002505:2537655:2560390256039025631012712Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranslocase5e-0651.2
NC_009457:2095366:2113622211362221163332712Vibrio cholerae O395 chromosome 2, complete sequencepreprotein translocase subunit SecA5e-0651.2
NC_012578:2479150:2497405249740525001162712Vibrio cholerae M66-2 chromosome I, complete sequencepreprotein translocase subunit SecA5e-0651.2
NC_012582:2626786:2645042264504226477532712Vibrio cholerae O395 chromosome chromosome I, complete sequencepreprotein translocase, SecA subunit5e-0651.2
NC_016445:2012294:2030544203054420332552712Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completepreprotein translocase subunit SecA5e-0651.2
NC_016944:2588435:2606688260668826093992712Vibrio cholerae IEC224 chromosome I, complete sequencepreprotein translocase subunit SecA5e-0651.2
NC_015677:285896:287552287552288328777Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein6e-0650.8
NC_013194:4034854:404588340458834046137255Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeSEC-C motif domain protein7e-0650.8
NC_006155:2461262:247069924706992471163465Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein8e-0650.4