Pre_GI: BLASTP Hits

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Query: NC_009089:3142976:3155757 Clostridium difficile 630, complete genome

Start: 3155757, End: 3157130, Length: 1374

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:3056925:3069572306957230709451374Clostridium difficile R20291, complete genomehypothetical protein0821
NC_014171:3779956:3782583378258337839681386Bacillus thuringiensis BMB171 chromosome, complete genometransporter3e-103375
NC_011725:3897450:3901764390176439031491386Bacillus cereus B4264 chromosome, complete genomehypothetical protein4e-103375
NC_017208:3897253:3898726389872639001111386Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetransporter1e-102374
NC_011772:3863166:3867842386784238692271386Bacillus cereus G9842, complete genomehypothetical protein2e-101369
NC_017200:3737185:3741789374178937431741386Bacillus thuringiensis serovar finitimus YBT-020 chromosome,hypothetical protein7e-101367
NC_011658:3680829:3685493368549336868781386Bacillus cereus AH187 chromosome, complete genomehypothetical protein2e-100366
NC_016771:3633327:3637991363799136393761386Bacillus cereus NC7401, complete genomehypothetical protein2e-100366
NC_004722:3855326:3859436385943638608211386Bacillus cereus ATCC 14579, complete genomeTransporter2e-100366
NC_003909:3671468:3675533367553336769211389Bacillus cereus ATCC 10987, complete genomehypothetical protein3e-100365
NC_011969:3627980:3629453362945336308381386Bacillus cereus Q1 chromosome, complete genomehypothetical protein8e-100364
NC_006274:3773335:3777980377798037793651386Bacillus cereus E33L, complete genomehypothetical protein7e-99361
NC_011773:3729500:3732329373232937337141386Bacillus cereus AH820 chromosome, complete genomehypothetical protein5e-95348
NC_005957:3716487:3719114371911437204991386Bacillus thuringiensis serovar konkukian str. 97-27, completehypothetical protein5e-95348
NC_012472:3743473:3744945374494537463301386Bacillus cereus 03BB102, complete genomehypothetical protein9e-95347
NC_016779:3660000:3662777366277736641621386Bacillus cereus F837/76 chromosome, complete genomehypothetical protein9e-95347
NC_008600:3724312:3726855372685537283241470Bacillus thuringiensis str. Al Hakam, complete genomehypothetical protein7e-95347
NC_014335:3645500:3648296364829636496811386Bacillus cereus biovar anthracis str. CI chromosome, completeputative transporter protein2e-94346
NC_012659:3692803:3696946369694636983311386Bacillus anthracis str. A0248, complete genomehypothetical protein7e-94344
NC_003997:3692776:3696919369691936983041386Bacillus anthracis str. Ames, complete genomehypothetical protein7e-94344
NC_007530:3694940:3697046369704636984311386Bacillus anthracis str. 'Ames Ancestor', complete genomehypothetical protein7e-94344
NC_005945:3693471:3697614369761436989991386Bacillus anthracis str. Sterne, complete genomehypothetical protein7e-94344
NC_010674:3141228:3158259315825931596561398Clostridium botulinum B str. Eklund 17B, complete genometransporter1e-85317
NC_015519:245036:2603542603542617451392Tepidanaerobacter sp. Re1 chromosome, complete genomehypothetical protein9e-77288
NC_021182:4088000:4107300410730041086641365Clostridium pasteurianum BC1, complete genomehypothetical protein2e-76286
NC_014829:988980:1004671100467110061011431Bacillus cellulosilyticus DSM 2522 chromosome, complete genomehypothetical protein9e-72271
NC_006582:2205154:2219011221901122204051395Bacillus clausii KSM-K16, complete genomehypothetical protein4e-58226
NC_010184:3757000:375889237588923758996105Bacillus weihenstephanensis KBAB4, complete genome8e-0755.5