Pre_GI: BLASTP Hits

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Query: NC_008542:855347:860633 Burkholderia cenocepacia HI2424 chromosome 1, complete sequence

Start: 860633, End: 861445, Length: 813

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008060:306170:311458311458312270813Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceMscS Mechanosensitive ion channel6e-131466
NC_010508:809974:813030813030813842813Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceMscS Mechanosensitive ion channel6e-131466
NC_011000:3514338:355662235566223557434813Burkholderia cenocepacia J2315 chromosome 1, complete sequencemechanosensitive ion channel protein2e-119428
NC_010084:2822295:285397928539792854791813Burkholderia multivorans ATCC 17616 chromosome 1, completeMscS mechanosensitive ion channel2e-115415
NC_007510:759905:762827762827763639813Burkholderia sp. 383 chromosome 1, complete sequenceMscS Mechanosensitive ion channel2e-115414
NC_006350:3329477:336284033628403363712873Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein3e-105381
NC_006348:2372945:240630724063072407179873Burkholderia mallei ATCC 23344 chromosome 1, complete sequencemechanosensitive ion channel YggB3e-105381
NC_009080:2123987:215739421573942158221828Burkholderia mallei NCTC 10247 chromosome II, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family2e-105381
NC_008785:516500:516579516579517406828Burkholderia mallei SAVP1 chromosome II, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family2e-105381
NC_009074:3163362:319677131967713197598828Burkholderia pseudomallei 668 chromosome I, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family2e-105381
NC_008836:1072721:110612811061281106955828Burkholderia mallei NCTC 10229 chromosome II, complete sequencemechanosensitive ion channel YggB2e-105381
NC_009076:3179662:321306932130693213896828Burkholderia pseudomallei 1106a chromosome I, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family2e-105381
NC_007434:3588081:362148936214893622316828Burkholderia pseudomallei 1710b chromosome I, complete sequenceYggB2e-105381
NC_015381:766355:769416769416770231816Burkholderia gladioli BSR3 chromosome 1, complete sequenceYggB3e-103374
NC_007951:570500:597074597074597886813Burkholderia xenovorans LB400 chromosome 1, complete sequenceSmall Conductance Mechanosensitive Ion Channel, (MscS) Family3e-84311
NC_017192:497950:510259510259511119861Arcobacter sp. L, complete genomemechanosensitive ion channel5e-28125
NC_016940:3600749:362449536244953625313819Saprospira grandis str. Lewin chromosome, complete genomemechanosensitive ion channel protein MscS6e-26118
NC_012668:83641:108699108699109562864Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein5e-24111
NC_009654:4253431:425706542570654257895831Marinomonas sp. MWYL1, complete genomeMscS mechanosensitive ion channel7e-22104
NC_009092:1305355:132588213258821326706825Shewanella loihica PV-4, complete genomeMscS Mechanosensitive ion channel2e-20100
NC_014844:1818939:183836918383691839220852Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomemechanosensitive ion channel protein MscS3e-1995.5
NC_008261:225425:249255249255250070816Clostridium perfringens ATCC 13124, complete genomemechanosensitive ion channel family protein5e-1994.7
NC_003366:255480:279879279879280694816Clostridium perfringens str. 13, complete genomehypothetical protein5e-1994.7
NC_008262:227354:251679251679252494816Clostridium perfringens SM101, complete genomeMechanosensitive ion channel family8e-1994.4
NC_013316:1:163741637417255882Clostridium difficile R20291, complete genomeputative mechanosensitive ion channel protein2e-1892.8
NC_007005:4857768:487202348720234872853831Pseudomonas syringae pv. syringae B728a, complete genomeMscS Mechanosensitive ion channel3e-1892
NC_004578:4940000:495636049563604957190831Pseudomonas syringae pv. tomato str. DC3000, complete genomemechanosensitive ion channel family protein1e-1790.1
NC_019942:1211535:123989512398951240713819Aciduliprofundum sp. MAR08-339, complete genomesmall-conductance mechanosensitive channel2e-1789.7
NC_009089:1:166121661217493882Clostridium difficile 630, complete genomeputative mechanosensitive ion channel protein9e-1787.4
NC_020541:3655223:366851336685133669397885Rhodanobacter sp. 2APBS1, complete genomesmall-conductance mechanosensitive channel8e-1477.8
NC_015144:1333179:133443413344341335351918Weeksella virosa DSM 16922 chromosome, complete genomeMscS Mechanosensitive ion channel7e-1374.7
NC_017080:50000:568555685557832978Phycisphaera mikurensis NBRC 102666, complete genomeputative small-conductance mechanosensitive channel9e-1374.3
NC_007498:357484:385326385326386180855Pelobacter carbinolicus DSM 2380, complete genomesmall-conductance mechanosensitive channel1e-1170.9
NC_007298:2947200:295468129546812955511831Dechloromonas aromatica RCB, complete genomeMscS Mechanosensitive ion channel:Conserved TM helix4e-1168.9
NC_014355:243543:243543243543244343801Candidatus Nitrospira defluvii, complete genomesmall-conductance mechanosensitive channel4e-1168.6
NC_007517:2926792:293255229325522933448897Geobacter metallireducens GS-15, complete genomeMscS Mechanosensitive ion channel1e-1067.4
NC_015385:2505977:252451125245112525320810Treponema succinifaciens DSM 2489 chromosome, complete genomeMscS Mechanosensitive ion channel3e-0962.8
NC_019940:2731105:2734172273417227356771506Thioflavicoccus mobilis 8321 chromosome, complete genomesmall-conductance mechanosensitive channel4e-0962.4
NC_014471:674500:709666709666710502837Ignisphaera aggregans DSM 17230 chromosome, complete genomeMscS Mechanosensitive ion channel3e-0859.3
NC_016614:1543333:1545084154508415476602577Vibrio sp. EJY3 chromosome 2, complete sequencepotassium efflux system kefA / Small-conductance mechanosensitive channel3e-0859.3
NC_014658:701020:722479722479723243765Methanothermus fervidus DSM 2088 chromosome, complete genomemscs mechanosensitive ion channel6e-0858.2
NC_015556:515641:5295425295425329013360Pseudomonas fulva 12-X chromosome, complete genomeMscS Mechanosensitive ion channel1e-0757.4
NC_012724:1781554:1802139180213918045742436Burkholderia glumae BGR1 chromosome 1, complete genomeMscS Mechanosensitive ion channel1e-0757.4
NC_013592:3212834:3213829321382932162372409Dickeya dadantii Ech586, complete genomeMscS Mechanosensitive ion channel1e-0757
NC_009428:833701:8347408347408372892550Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomemechanosensitive ion channel MscS3e-0755.8
NC_016745:2280375:2280375228037522815321158Oceanimonas sp. GK1 chromosome, complete genomemechanosensitive ion channel protein MscS4e-0755.5
NC_013173:1305916:1308676130867613100131338Desulfomicrobium baculatum DSM 4028, complete genomeMscS Mechanosensitive ion channel7e-0754.7
NC_004459:1:77407740102562517Vibrio vulnificus CMCP6 chromosome I, complete sequenceSmall-conductance mechanosensitive channel7e-0754.7
NC_007517:2165657:2168648216864821697301083Geobacter metallireducens GS-15, complete genomeMscS Mechanosensitive ion channel1e-0653.9
NC_010515:2037825:2057870205787020603142445Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceMscS Mechanosensitive ion channel1e-0653.5
NC_009483:2401209:2417464241746424185431080Geobacter uraniireducens Rf4 chromosome, complete genomemechanosensitive ion channel MscS2e-0653.5
NC_015846:790374:791877791877792707831Capnocytophaga canimorsus Cc5 chromosome, complete genomehypothetical protein2e-0653.5
NC_012029:1525929:1550127155012715512451119Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomeMscS Mechanosensitive ion channel2e-0652.8
NC_017079:2634623:2633241263324126346261386Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomemechanosensitive ion channel family protein3e-0652.8
NC_010552:2331486:2331486233148623339302445Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceMscS Mechanosensitive ion channel3e-0652.4
NC_011989:2262881:2262881226288122653582478Agrobacterium vitis S4 chromosome 1, complete sequencepotassium efflux system KEFA6e-0651.6
NC_012917:3241196:3244755324475532472022448Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeMscS Mechanosensitive ion channel6e-0651.6
NC_013421:1505176:1520963152096315234162454Pectobacterium wasabiae WPP163, complete genomeMscS Mechanosensitive ion channel7e-0651.2
NC_015519:2739347:274158327415832742446864Tepidanaerobacter sp. Re1 chromosome, complete genomeMscS Mechanosensitive ion channel7e-0651.2
NC_014471:1269571:127610312761031276909807Ignisphaera aggregans DSM 17230 chromosome, complete genomeMscS Mechanosensitive ion channel8e-0651.2
NC_019792:3735654:3757245375724537582791035Natronobacterium gregoryi SP2 chromosome, complete genomesmall-conductance mechanosensitive channel8e-0651.2
NC_019673:1384795:140181214018121402696885Saccharothrix espanaensis DSM 44229 complete genomeMechanosensitive ion channel8e-0651.2