Pre_GI: BLASTP Hits

Some Help

Query: NC_008262:1795914:1808961 Clostridium perfringens SM101, complete genome

Start: 1808961, End: 1810247, Length: 1287

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1901898:1919598191959819208841287Clostridium perfringens str. 13, complete genomeprobable lipoprotein0699
NC_008261:2117207:2134911213491121361971287Clostridium perfringens ATCC 13124, complete genomehypothetical protein0697
NC_012563:2979147:2998706299870629999051200Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein6e-64244
NC_009697:2680607:2697530269753026987291200Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein7e-63241
NC_015425:906969:9084169084169097351320Clostridium botulinum BKT015925 chromosome, complete genomehypothetical protein1e-57224
NC_010723:2735196:2750889275088927521901302Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein1e-51204
NC_010674:2930259:2946576294657629478801305Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein7e-51201
NC_008593:841291:8427408427408440711332Clostridium novyi NT, complete genomePredicted membrane protein2e-50200
NC_010718:3039434:3043822304382230456601839Natranaerobius thermophilus JW/NM-WN-LF, complete genomeGlucose/sorbosone dehydrogenase-like protein1e-25118