Pre_GI: BLASTP Hits

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Query: NC_008258:2190635:2195428 Shigella flexneri 5 str. 8401, complete genome

Start: 2195428, End: 2196243, Length: 816

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2225418:223401822340182234833816Shigella flexneri 2002017 chromosome, complete genomeputative type-1 fimbrial protein5e-137486
NC_004337:2185282:219312821931282193943816Shigella flexneri 2a str. 301, complete genomeputative type-1 fimbrial protein5e-137486
NC_004741:2169877:217465821746582175467810Shigella flexneri 2a str. 2457T, complete genome9e-136482
CP002185:2347413:2355972235597223570061035Escherichia coli W, complete genomepredicted fimbrial-like adhesin protein3e-134477
NC_009800:2225182:2229729222972922307631035Escherichia coli HS, complete genomehypothetical protein3e-133474
NC_010468:1694729:1706583170658317076171035Escherichia coli ATCC 8739, complete genomeputative type-1 fimbrial protein2e-133474
AC_000091:2185369:2190714219071421917481035Escherichia coli W3110 DNA, complete genomepredicted fimbrial-like adhesin protein2e-133474
NC_000913:2180855:2185402218540221864361035Escherichia coli K12, complete genomepredicted fimbrial-like adhesin protein2e-133474
NC_012759:2069326:2077885207788520789191035Escherichia coli BW2952 chromosome, complete genomeputative fimbrial-like adhesin protein9e-133472
CU928160:2239637:2246922224692222479561035Escherichia coli IAI1 chromosome, complete genomeputative exported fimbrial-like adhesin protein2e-132471
NC_011741:2239637:2246922224692222479561035Escherichia coli IAI1 chromosome, complete genomeputative exported fimbrial-like adhesin protein2e-132471
NC_007384:2251792:2259077225907722601111035Shigella sonnei Ss046, complete genomeputative type-1 fimbrial protein6e-132469
NC_011745:2399313:2406598240659824076321035Escherichia coli ED1a chromosome, complete genomeputative exported fimbrial-like adhesin protein1e-131469
NC_011750:955451:9678949678949689281035Escherichia coli IAI39 chromosome, complete genomeputative exported fimbrial-like adhesin protein1e-131468
NC_016822:2341127:2348412234841223494311020Shigella sonnei 53G, complete genomeputative fimbrial-like adhesin protein StcD9e-127452
NC_011740:2220251:2237217223721722382571041Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein, putative exported protein2e-46186
NC_013008:2851342:2858901285890128599351035Escherichia coli O157:H7 str. TW14359 chromosome, complete genomefimbrial protein7e-1064.7
NC_011353:2852362:2859920285992028609541035Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype-1 fimbrial protein7e-1064.7
NC_002695:2854629:2863109286310928641431035Escherichia coli O157:H7 str. Sakai, complete genomeputative type-1 fimbrial protein7e-1064.7
NC_002655:2925787:2933340293334029343741035Escherichia coli O157:H7 EDL933, complete genomeputative fimbrial protein7e-1064.7