Pre_GI: BLASTP Hits

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Query: NC_007952:3196085:3210416 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3210416, End: 3210643, Length: 228

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009256:2193647:2193647219364721969283282Burkholderia vietnamiensis G4 chromosome 1, complete sequenceDNA polymerase III subunit alpha2e-1994.4
NC_015377:86847:1074901074901106393150Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequenceDNA polymerase III, alpha subunit2e-1891.3
NC_010552:335989:3503323503323522571926Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceDNA-directed DNA polymerase4e-1890.1
NC_012725:97681:1003971003971035463150Burkholderia glumae BGR1 plasmid bglu_4p, complete sequenceDNA polymerase III, alpha subunit2e-1787.8
NC_017075:1869326:1885706188570618888613156Rubrivivax gelatinosus IL144, complete genomeerror-prone DNA polymerase DnaE2e-1580.9
NC_008782:2062962:2062962206296220661563195Acidovorax sp. JS42, complete genomeDNA polymerase III, alpha subunit4e-1579.7
NC_008752:558828:5641735641735653271155Acidovorax avenae subsp. citrulli AAC00-1, complete genome9e-1579
NC_012791:4794362:4794362479436247974843123Variovorax paradoxus S110 chromosome 1, complete genomeDNA polymerase III, alpha subunit5e-1269.7
NC_008380:2210649:2233156223315622364163261Rhizobium leguminosarum bv. viciae 3841, complete genomeputative DNA polymerase III subunit2e-1167.8
NC_013061:2775623:2790388279038827935253138Pedobacter heparinus DSM 2366, complete genomeDNA polymerase III, alpha subunit2e-1167.4
NC_009720:900884:9021689021689053473180Xanthobacter autotrophicus Py2, complete genomeDNA polymerase III, alpha subunit1e-1065.5
NC_016631:3917253:3949768394976839529863219Granulicella mallensis MP5ACTX8 chromosome, complete genomeDNA polymerase III subunit alpha5e-1063.2
NC_009668:445134:4757024757024788813180Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceDNA polymerase III, alpha subunit2e-0961.6
NC_006958:628035:6529096529096560763168Corynebacterium glutamicum ATCC 13032, complete genomeDNA polymerase III subunit alpha4e-0960.5
NC_003450:627500:6514486514486546153168Corynebacterium glutamicum ATCC 13032, complete genomeerror-prone DNA polymerase4e-0960.5
NC_016887:1093609:1093609109360910969833375Nocardia cyriacigeorgica GUH-2, complete genomeerror-prone DNA polymerase3e-0960.5
NC_008358:2574343:2589483258948325927463264Hyphomonas neptunium ATCC 15444, complete genomeputative DNA polymerase III, alpha subunit3e-0960.5
NC_008769:3769065:3769065376906537723043240Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative dna polymerase III (alpha chain) dnaE26e-0959.7
NC_012207:3766978:3766978376697837702173240Mycobacterium bovis BCG str. Tokyo 172, complete genomeerror-prone DNA polymerase6e-0959.7
NC_000962:3781501:3781501378150137847403240Mycobacterium tuberculosis H37Rv, complete genomeDNA polymerase III subunit alpha6e-0959.7
NC_009565:3793976:3793976379397637972153240Mycobacterium tuberculosis F11, complete genomeDNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)6e-0959.7
NC_002945:3735141:3735141373514137384163276Mycobacterium bovis AF2122/97, complete genomeerror-prone DNA polymerase6e-0959.7
NC_002755:3773734:3773734377373437770303297Mycobacterium tuberculosis CDC1551, complete genomeDNA polymerase III subunit alpha5e-0959.7
NC_012943:3777371:3777371377737137806673297Mycobacterium tuberculosis KZN 1435 chromosome, complete genomeerror-prone DNA polymerase5e-0959.7
NC_016768:3774105:3774105377410537774013297Mycobacterium tuberculosis KZN 4207 chromosome, complete genomeDNA polymerase subunit III alpha dnaE25e-0959.7
NC_012483:3672768:3697908369790837011233216Acidobacterium capsulatum ATCC 51196, complete genomeDNA polymerase III, alpha subunit1e-0858.5
NC_007510:1959883:196042819604281960628201Burkholderia sp. 383 chromosome 1, complete sequence2e-0858.2
NC_013889:1159343:1159343115934311624773135Thioalkalivibrio sp. K90mix chromosome, complete genomeDNA polymerase III, alpha subunit2e-0857.8
NC_015186:2129046:2146055214605521491683114Acidiphilium multivorum AIU301, complete genomeerror-prone DNA polymerase8e-0855.8
NC_016786:533537:5373835373835405263144Corynebacterium diphtheriae HC01 chromosome, complete genomeerror-prone DNA polymerase9e-0752.4
NC_016782:537412:5374125374125405553144Corynebacterium diphtheriae 241 chromosome, complete genomeerror-prone DNA polymerase9e-0752.4
NC_016783:537717:5415635415635447063144Corynebacterium diphtheriae INCA 402 chromosome, complete genomeerror-prone DNA polymerase1e-0652
NC_013947:3080290:3099309309930931026263318Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeDNA polymerase III subunit alpha3e-0650.4
NC_013947:3785332:3800254380025438034753222Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeDNA polymerase III subunit alpha4e-0650.4
NC_008435:4530797:453548645354864535872387Rhodopseudomonas palustris BisA53, complete genomenucleic acid binding, OB-fold, tRNA/helicase-type6e-0649.7