Pre_GI Gene

Some Help

Host: NC_008380 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008380:2210649 Rhizobium leguminosarum bv. viciae 3841, complete genome

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This biovar nodulates legumes in the Tribe Viciae (Vicia, Pisum, Lathyrus, Lens). This strain is a spontaneous streptomycin-resistant mutant of strain 300. Nitrogen-fixing plant symbiont. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
221064922124091761putative single-stranded-DNA-specific exonucleaseQuickGO ontologyBLASTP
2212458221253275tRNA-GluQuickGO ontology
2212786221286075tRNA-GluQuickGO ontology
2212935221300975tRNA-GluQuickGO ontology
221320722142741068hypothetical proteinBLASTP
22144422214882441putative glyoxalaseQuickGO ontologyBLASTP
22150782215656579putative cold shock proteinQuickGO ontologyBLASTP
22156592216147489hypothetical proteinBLASTP
2216207221628377tRNA-ProQuickGO ontologyBLASTP
22162882216602315hypothetical protein
22169242217229306putative NADH-ubiquinone oxidoreductase subunitQuickGO ontologyBLASTP
2217287221736377tRNA-ArgQuickGO ontology
221772722222804554hypothetical proteinBLASTP
22225912223145555hypothetical protein
222331122244711161hypothetical proteinBLASTP
22248502225809960putative transmembrane proteinQuickGO ontology
22268222227127306hypothetical protein
222723822294842247hypothetical proteinBLASTP
22296932230043351BLASTP
22301602230495336hypothetical protein
22304922230776285hypothetical protein
22309542231724771hypothetical proteinBLASTP
223181622331591344hypothetical proteinBLASTP
223315622364163261putative DNA polymerase III subunitQuickGO ontologyBLASTP
22367442237256513hypothetical protein
223765322386961044putative transmembrane proteinQuickGO ontology
22390422239629588hypothetical protein
22401972240970774hypothetical proteinBLASTP
22413582242203846putative transmembrane proteinQuickGO ontologyBLASTP
224228922433441056putative transmembrane proteinQuickGO ontology
22433652243544180hypothetical protein
22436322244174543putative transmembrane proteinQuickGO ontology
22443322244952621hypothetical protein
22451522245340189hypothetical protein
22454942245925432putative transmembrane proteinQuickGO ontology
22463962247325930hypothetical proteinBLASTP
22475542248288735hypothetical proteinBLASTP
22483002248959660hypothetical proteinBLASTP
224923822505511314hypothetical protein
225068522561625478hypothetical proteinBLASTP