Pre_GI: BLASTN Hits

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Query: NC_008380:2210649 Rhizobium leguminosarum bv. viciae 3841, complete genome

Start: 2210649, End: 2256162, Length: 45514

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This biovar nodulates legumes in the Tribe Viciae (Vicia, Pisum, Lathyrus, Lens). This strain is a spontaneous streptomycin-resistant mutant of strain 300. Nitrogen-fixing plant symbiont. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009720:90088490088492712426241Xanthobacter autotrophicus Py2, complete genome3e-44188BLASTN svgBLASTP svg
NC_009668:445134*44513451474969616Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence2e-39172BLASTN svgBLASTP svg
NC_014010:484000*48400050804924050Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete5e-31145BLASTN svgBLASTP svg
NC_010172:480000*48000053036650367Methylobacterium extorquens PA1, complete genome7e-30141BLASTN svgBLASTP svg
NC_000963:10240001024000104641822419Rickettsia prowazekii str. Madrid E, complete genome3e-26129BLASTN svgBLASTP svg
NC_012791:47943624794362484977455413Variovorax paradoxus S110 chromosome 1, complete genome4e-19105BLASTN svgBLASTP svg
NC_014375:21761221761224296425353Brevundimonas subvibrioides ATCC 15264 chromosome, complete genome2e-18103BLASTN svgBLASTP svg
NC_014006:344331*34433136701722687Sphingobium japonicum UT26S chromosome 1, complete genome2e-18103BLASTN svgBLASTP svg
NC_011004:40739164073916411759943684Rhodopseudomonas palustris TIE-1, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010002:5111665*5111665513441222748Delftia acidovorans SPH-1, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_013446:1724000*1724000175930835309Comamonas testosteroni CNB-2, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_013446:1889500*1889500191816228663Comamonas testosteroni CNB-2, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_015722:852000*85200087422622227Candidatus Midichloria mitochondrii IricVA chromosome, complete1e-1697.6BLASTN svgBLASTP svg
NC_014394:1658357*1658357168283924483Gallionella capsiferriformans ES-2 chromosome, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_012791:2423466*2423466246659343128Variovorax paradoxus S110 chromosome 1, complete genome6e-1591.7BLASTN svgBLASTP svg
NC_019815:782987*78298780605323067Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei9e-1487.7BLASTN svgBLASTP svg
NC_020299:149118*14911816889819781Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete9e-1487.7BLASTN svgBLASTP svg
NC_012854:111757917579Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,4e-1385.7BLASTN svgBLASTP svg
NC_003317:1263562*1263562128225718696Brucella melitensis 16M chromosome I, complete sequence1e-1283.8BLASTN svgBLASTP svg
NC_015222:2475792*2475792249670020909Nitrosomonas sp. AL212 chromosome, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_008347:1636660*1636660166438627727Maricaulis maris MCS10, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_008782:2062962*2062962208700324042Acidovorax sp. JS42, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_020260:2725201*2725201275882333623Cronobacter sakazakii Sp291, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_020126:2883194*2883194290469121498Myxococcus stipitatus DSM 14675, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_013282:12009931200993124927948287Cronobacter turicensis, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_009654:4253431*4253431427667923249Marinomonas sp. MWYL1, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_007434:1809946*1809946187124661301Burkholderia pseudomallei 1710b chromosome I, complete sequence4e-1075.8BLASTN svgBLASTP svg
NC_007651:3064530*30645303173670109141Burkholderia thailandensis E264 chromosome I, complete sequence4e-1075.8BLASTN svgBLASTP svg
NC_007973:2348481*2348481238802339543Ralstonia metallidurans CH34 chromosome 1, complete sequence4e-1075.8BLASTN svgBLASTP svg
NC_008313:2629281*2629281264709917819Ralstonia eutropha H16 chromosome 1, complete sequence4e-1075.8BLASTN svgBLASTP svg
NC_008390:1293823*1293823131887025048Burkholderia cepacia AMMD chromosome 1, complete sequence4e-1075.8BLASTN svgBLASTP svg
NC_008570:2014151*2014151204014925999Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_013889:11593431159343120135542013Thioalkalivibrio sp. K90mix chromosome, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_014323:3292082*3292082331943527354Herbaspirillum seropedicae SmR1 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007712:4067500*4067500409105923560Sodalis glossinidius str. 'morsitans', complete genome6e-0971.9BLASTN svgBLASTP svg
NC_007516:53250053250055441121912Synechococcus sp. CC9605, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_007513:1721359*1721359174344122083Synechococcus sp. CC9902, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_006511:2251022*2251022227421723196Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-0971.9BLASTN svgBLASTP svg
NC_004631:23663352366335238728320949Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-0971.9BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-0971.9BLASTN svgBLASTP svg
NC_003197:60604860604862559319546Salmonella typhimurium LT2, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_008319:18295711829571184827718707Synechococcus sp. CC9311, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_010102:24954412495441251396918529Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-0971.9BLASTN svgBLASTP svg
NC_020064:79422*7942212524145820Serratia marcescens FGI94, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_015968:204969*20496922599121023Enterobacter asburiae LF7a chromosome, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_015224:4386599*4386599441050923911Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,6e-0971.9BLASTN svgBLASTP svg
NC_015186:21290462129046215448525440Acidiphilium multivorum AIU301, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_011149:58889558889560977120877Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-0971.9BLASTN svgBLASTP svg
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,6e-0971.9BLASTN svgBLASTP svg
NC_010465:62348*6234810809945752Yersinia pseudotuberculosis YPIII, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_009952:2381601*2381601241824736647Dinoroseobacter shibae DFL 12, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008752:55882855882857802619199Acidovorax avenae subsp. citrulli AAC00-1, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_006905:65173265173267724625515Salmonella enterica subsp. enterica serovar Choleraesuis str2e-0869.9BLASTN svgBLASTP svg
NC_004578:4204235*4204235422545421220Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004129:4596040*4596040462128225243Pseudomonas fluorescens Pf-5, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_003911:1791878*1791878185265460777Silicibacter pomeroyi DSS-3, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-0869.9BLASTN svgBLASTP svg
NC_011080:61042861042863159921172Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-0869.9BLASTN svgBLASTP svg
NC_011830:4645453*4645453466825622804Desulfitobacterium hafniense DCB-2, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012560:2348202*2348202238326135060Azotobacter vinelandii DJ, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_013956:12075001207500123738329884Pantoea ananatis LMG 20103 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014216:2538500*2538500256387025371Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014837:1144500*1144500117382529326Pantoea sp. At-9b chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015410:2351464*2351464238751136048Pseudomonas mendocina NK-01 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_021150:2348214*2348214238327335060Azotobacter vinelandii CA6, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012559:978419*978419100401325595Laribacter hongkongensis HLHK9, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015501:1341661*1341661136603824378Porphyromonas asaccharolytica DSM 20707 chromosome, complete1e-0663.9BLASTN svgBLASTP svg
NC_011894:2184956*2184956220848223527Methylobacterium nodulans ORS 2060, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010801:23843023843026313424705Burkholderia multivorans ATCC 17616 chromosome 3, complete5e-0661.9BLASTN svgBLASTP svg
NC_010804:1334581*1334581135591721337Burkholderia multivorans ATCC 17616 chromosome 1, complete5e-0661.9BLASTN svgBLASTP svg
NC_011138:3182807*3182807321165528849Alteromonas macleodii 'Deep ecotype', complete genome5e-0661.9BLASTN svgBLASTP svg
NC_012214:2805297*2805297283239127095Erwinia pyrifoliae Ep1/96, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_012526:157000*15700017910522106Deinococcus deserti VCD115, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_013595:81621818162181819649034310Streptosporangium roseum DSM 43021, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_013851:2317091*2317091233893321843Allochromatium vinosum DSM 180 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_014306:1286248*1286248131002823781Erwinia billingiae Eb661, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_014562:469154*46915449304023887Pantoea vagans C9-1 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_015663:2807574*2807574283616128588Enterobacter aerogenes KCTC 2190 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_020064:1150982*1150982117040619425Serratia marcescens FGI94, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_009050:212270*21227028083968570Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence5e-0661.9BLASTN svgBLASTP svg