Pre_GI: BLASTP Hits

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Query: NC_007951:2904644:2909343 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2909343, End: 2910008, Length: 666

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015381:2859000:2913291291329129145471257Burkholderia gladioli BSR3 chromosome 1, complete sequencephage integrase8e-71266
NC_015138:2069739:2076835207683520780911257Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeintegrase family protein6e-69260
NC_014910:2015627:2022969202296920239911023Alicycliphilus denitrificans BC chromosome, complete genomeintegrase family protein4e-64244
NC_011992:1318691:1325211132521113264671257Acidovorax ebreus TPSY, complete genomeintegrase family protein2e-62238
NC_012912:1295653:1301778130177813030341257Dickeya zeae Ech1591, complete genomeintegrase family protein5e-55214
NC_008254:534590:5511175511175523731257Mesorhizobium sp. BNC1, complete genomephage integrase6e-52203
NC_002678:5714000:5714223571422357154851263Mesorhizobium loti MAFF303099, complete genomeCP4-like integrase2e-50199
NC_007508:2783443:2802474280247428036761203Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomephage-related integrase1e-38159
NC_016745:2028424:2035828203582820370151188Oceanimonas sp. GK1 chromosome, complete genomephage integrase family protein1e-37156
NC_008344:2374761:2378101237810123793031203Nitrosomonas eutropha C91, complete genomephage integrase family protein1e-37155
NC_004741:2593012:2612492261249226136941203Shigella flexneri 2a str. 2457T, complete genomeputative integrase1e-37155
NC_008344:669498:6859576859576871591203Nitrosomonas eutropha C91, complete genomephage integrase family protein1e-37155
NC_008463:1293079:1301126130112613023281203Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative integrase6e-37154
NC_013456:3011518:3030104303010430313001197Vibrio sp. Ex25 chromosome 1, complete genomeintegrase1e-35149
NC_015186:1126830:1130897113089711321111215Acidiphilium multivorum AIU301, complete genomephage integrase family protein1e-35149
NC_011283:1307173:1309011130901113102611251Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase1e-35149
NC_009800:2651730:2667104266710426682911188Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family3e-35148
NC_012779:3016327:3032118303211830333201203Edwardsiella ictaluri 93-146, complete genomeintegrase3e-35148
NC_016602:2854107:2874022287402228752091188Vibrio furnissii NCTC 11218 chromosome 1, complete sequencephage integrase family protein4e-35147
NC_015733:1179977:1183392118339211846211230Pseudomonas putida S16 chromosome, complete genomeputative phage-related integrase protein3e-34144
NC_008254:611437:613377613377614201825Mesorhizobium sp. BNC1, complete genomeCP4-like integrase2e-31135
NC_013416:1091432:110681811068181107576759Aggregatibacter actinomycetemcomitans D11S-1, complete genomeputative integrase5e-31134
NC_016513:1400899:141742814174281418261834Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completephage integrase family site-specific recombinase3e-30131
NC_009720:464078:4856024856024869871386Xanthobacter autotrophicus Py2, complete genomeintegrase family protein8e-24110
NC_009076:106807:1083791083791096081230Burkholderia pseudomallei 1106a chromosome I, complete sequencesite-specific recombinase, phage integrase family2e-1892.4
NC_012856:3615550:3641609364160936428411233Ralstonia pickettii 12D chromosome 1, complete genomeintegrase family protein1e-1273.2
NC_004556:1178897:1194756119475611959881233Xylella fastidiosa Temecula1, complete genomephage-related integrase2e-1169.3
NC_010577:1188438:1204296120429612055281233Xylella fastidiosa M23, complete genomeintegrase family protein2e-1169.3
NC_009801:3374501:3397619339761933988031185Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family protein6e-1064.3
NC_020409:621792:6725666725666737861221Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative prophage P4 integrase5e-0961.2
NC_016612:477407:4954564954564966461191Klebsiella oxytoca KCTC 1686 chromosome, complete genomeIntegrase4e-0858.5
NC_004547:2470978:2485016248501624860651050Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeprophage integrase6e-0857.8
NC_008390:2018201:2024037202403720252811245Burkholderia cepacia AMMD chromosome 1, complete sequencephage integrase family protein7e-0857.4
NC_011740:2859933:2872100287210028732691170Escherichia fergusonii ATCC 35469, complete genomeIntegrase8e-0857.4
NC_021066:839734:8625988625988637731176Raoultella ornithinolytica B6, complete genomephage integrase1e-0757
NC_016816:2684336:269242026924202693172753Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family9e-0857
NC_014931:2929695:2933381293338129345921212Variovorax paradoxus EPS chromosome, complete genomeintegrase family protein9e-0857
NC_013508:1491945:1507448150744815086231176Edwardsiella tarda EIB202, complete genomeputative integrase1e-0756.6
NC_012917:3684840:3695126369512636962891164Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein2e-0755.8
NC_009800:320115:3338373338373350451209Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family protein2e-0755.8
NC_004578:3817330:3824867382486738260421176Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family4e-0755.1
NC_019973:2417000:2428085242808524293501266Mesorhizobium australicum WSM2073, complete genomeIntegrase6e-0754.3
NC_014923:2439197:2450921245092124521861266Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeintegrase family protein6e-0754.3
NC_015675:2567000:2578074257807425793391266Mesorhizobium opportunistum WSM2075 chromosome, complete genomeintegrase family protein6e-0754.3
NC_013361:4959323:4965243496524349664121170Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase9e-0753.9
NC_016830:3869572:3873555387355538753961842Pseudomonas fluorescens F113 chromosome, complete genomeintegrase family protein7e-0753.9
NC_004129:5723787:5728657572865757298981242Pseudomonas fluorescens Pf-5, complete genomesite-specific recombinase, phage integrase family1e-0653.5
NC_010468:49074:5411954119552941176Escherichia coli ATCC 8739, complete genomeintegrase family protein1e-0653.1
NC_012917:3198000:3204199320419932053891191Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein1e-0653.1
NC_014306:4901390:4945226494522649464011176Erwinia billingiae Eb661, complete genomePhage integrase1e-0653.1
NC_004547:3866439:3878830387883038800561227Erwinia carotovora subsp. atroseptica SCRI1043, complete genomephage integrase1e-0653.1
NC_009832:110239:1164641164641176331170Serratia proteamaculans 568, complete genomeintegrase family protein2e-0652.8
NC_010498:4072681:4081597408159740827601164Escherichia coli SMS-3-5, complete genomephage integrase family site specific recombinase2e-0652.8
NC_013861:728648:7416787416787429101233Legionella longbeachae NSW150, complete genomephage-related integrase2e-0652.8
NC_013722:1905655:1926977192697719281131137Xanthomonas albilineans, complete genomeputative phage-related integrase protein2e-0652.8
NC_008344:1:6914691487671854Nitrosomonas eutropha C91, complete genomephage integrase family protein2e-0652.4
NC_015740:2692023:2712313271231327135661254Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completePutative integrase2e-0652.4
NC_011083:3171171:3187343318734331884461104Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,site-specific recombinase, phage integrase family2e-0652.4
NC_013361:3287671:330504333050433305708666Escherichia coli O26:H11 str. 11368 chromosome, complete genome3e-0652
NC_010498:301000:3068793068793080631185Escherichia coli SMS-3-5, complete genomephage integrase family site specific recombinase5e-0651.6
NC_007404:974461:1003571100357110047731203Thiobacillus denitrificans ATCC 25259, complete genomeputative integrase prophage protein4e-0651.6
NC_008825:2564965:2571922257192225737751854Methylibium petroleiphilum PM1, complete genomeintegrase (int)4e-0651.6
NC_012660:5571500:5577253557725355785901338Pseudomonas fluorescens SBW25 chromosome, complete genomeputative integrase4e-0651.6
NC_016147:586433:5907865907865926661881Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeintegrase family protein4e-0651.6
NC_011000:1216430:1223099122309912243011203Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative integrase5e-0651.2
NC_010002:4508467:4531718453171845336461929Delftia acidovorans SPH-1, complete genomeintegrase family protein5e-0651.2
NC_010508:2776283:2776283277628327774971215Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceintegrase family protein7e-0650.8
NC_010468:1343228:1356303135630313575081206Escherichia coli ATCC 8739, complete genomeintegrase family protein7e-0650.8
NC_012724:3222415:3222415322241532236771263Burkholderia glumae BGR1 chromosome 1, complete genomePhage integrase8e-0650.4
NC_012791:2423466:2458758245875824599691212Variovorax paradoxus S110 chromosome 1, complete genomeintegrase family protein9e-0650.4