Pre_GI: BLASTP Hits

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Query: NC_007951:1042291:1065463 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1065463, End: 1066374, Length: 912

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:2588435:259221825922182593048831Vibrio cholerae IEC224 chromosome I, complete sequencevitamin B12 transport system substrate-binding protein9e-46184
NC_002505:2537655:254592025459202546750831Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein9e-46184
NC_009457:2095366:209915220991522099982831Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein9e-46184
NC_012578:2479150:248293624829362483766831Vibrio cholerae M66-2 chromosome I, complete sequenceVitamin B12-binding protein9e-46184
NC_012582:2626786:263057226305722631402831Vibrio cholerae O395 chromosome chromosome I, complete sequenceVitamin B12-binding protein precursor9e-46184
NC_012668:1036000:104791610479161048746831Vibrio cholerae MJ-1236 chromosome 1, complete sequencevitamin B12 ABC transporter B12-binding component BtuF9e-46184
NC_016445:2012294:201607720160772016907831Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completevitamin B12 transport system substrate-binding protein9e-46184
NC_011566:1016858:103496910349691035793825Shewanella piezotolerans WP3, complete genomePeriplasmic binding protein1e-39163
NC_008570:1852286:186623018662301867051822Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeperiplasmic binding protein4e-39162
NC_014831:1557485:1558876155887615599131038Thermaerobacter marianensis DSM 12885 chromosome, complete genomeperiplasmic binding protein5e-36151
NC_015424:1603000:162345416234541624257804Aeromonas veronii B565 chromosome, complete genomeperiplasmic binding protein6e-36151
NC_015497:3794000:3818849381884938199911143Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeperiplasmic binding protein4e-35148
NC_009348:2836969:284033728403372841143807Aeromonas salmonicida subsp. salmonicida A449, complete genomecobalamin binding protein BtuF4e-33142
NC_011601:149428:188422188422189222801Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomevitamin B12-transporter protein BtuF5e-28125
NC_008148:2498000:255009925500992550851753Rubrobacter xylanophilus DSM 9941, complete genomeperiplasmic binding protein8e-22104
NC_012491:4987280:501000350100035010773771Brevibacillus brevis NBRC 100599, complete genomeprobable ABC transporter substrate binding protein9e-22104
NC_014483:1376500:1383180138318013841871008Paenibacillus polymyxa E681 chromosome, complete genomeABC-type Fe3+-hydroxamate transport system, periplasmic component1e-21103
NC_010718:2513917:252235825223582523326969Natranaerobius thermophilus JW/NM-WN-LF, complete genomeperiplasmic binding protein1e-20100
NC_014622:1514416:1520936152093615219431008Paenibacillus polymyxa SC2 chromosome, complete genomeABC transporter substrate-binding protein1e-20100
NC_015275:820723:8322618322618332621002Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, periplasmic subunit5e-2098.6
NC_016641:3173250:3180233318023331812371005Paenibacillus terrae HPL-003 chromosome, complete genomeFe3+-hydroxamate ABC transporter periplasmic protein8e-2097.8
NC_001263:2574755:2595145259514525961521008Deinococcus radiodurans R1 chromosome 1, complete sequenceiron ABC transporter, periplasmic substrate-binding protein, putative2e-1892.8
NC_015422:1163752:118794311879431188842900Alicycliphilus denitrificans K601 chromosome, complete genomeABC transporter periplasmic subunit9e-1684.3
NC_015703:4531578:453664145366414537429789Runella slithyformis DSM 19594 chromosome, complete genomeABC transporter periplasmic subunit1e-1584.3
NC_011992:1038985:105606410560641056954891Acidovorax ebreus TPSY, complete genomeperiplasmic binding protein2e-1583.2
NC_014958:3346500:336923533692353370122888Deinococcus maricopensis DSM 21211 chromosome, complete genomeABC transporter periplasmic subunit3e-1582.4
NC_008782:1136732:115380511538051154695891Acidovorax sp. JS42, complete genomeperiplasmic binding protein2e-1479.7
NC_013385:1617338:1629574162957416310251452Ammonifex degensii KC4, complete genomecopper amine oxidase domain protein3e-1375.9
NC_000917:1246806:124587512458751246809935Archaeoglobus fulgidus DSM 4304, complete genomespermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein (potD)7e-1374.7
NC_008010:105665:126435126435127304870Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceperiplasmic binding protein1e-1274.3
NC_013939:492959:509877509877510701825Deferribacter desulfuricans SSM1, complete genomeiron ABC transporter substrate-binding protein2e-1273.6
NC_006138:3355028:3369082336908233701101029Desulfotalea psychrophila LSv54, complete genomeiron (III) ABC transporter, periplasmic-binding protein3e-1272.8
NC_010505:5583000:559090955909095591733825Methylobacterium radiotolerans JCM 2831, complete genomeperiplasmic binding protein7e-1271.6
NC_010505:1205747:120574712057471206523777Methylobacterium radiotolerans JCM 2831, complete genomeperiplasmic binding protein3e-1169.3
NC_015966:2337833:234254823425482343354807Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeABC transporter periplasmic subunit1e-1067.4
NC_010511:5169338:518820251882025188996795Methylobacterium sp. 4-46 chromosome, complete genomeperiplasmic binding protein1e-1067.4
NC_013665:1766158:1795446179544617964591014Methanocella paludicola SANAE, complete genomeputative iron compound ABC transporter iron compound binding protein2e-1067
NC_013501:931418:945153945153945959807Rhodothermus marinus DSM 4252, complete genomeperiplasmic binding protein4e-1065.9
NC_007722:2172000:218622421862242187153930Erythrobacter litoralis HTCC2594, complete genomeprobable periplasmic substrate-binding protein4e-1065.5
NC_015757:2343193:234677323467732347693921Sulfobacillus acidophilus TPY chromosome, complete genomeperiplasmic binding protein5e-0962
NC_016884:3219030:322258932225893223530942Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeABC transporter periplasmic protein6e-0961.6
NC_014374:1072218:107986510798651080695831Acidilobus saccharovorans 345-15 chromosome, complete genomeABC transporter, substrate binding protein1e-0860.5
NC_014623:9038177:905984190598419060704864Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeiron-binding protein2e-0860.5
NC_015573:2187688:2205510220551022065471038Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeABC transporter periplasmic protein2e-0860.1
NC_011989:2262881:226695322669532267891939Agrobacterium vitis S4 chromosome 1, complete sequenceABC transporter substrate binding protein (hemin)4e-0858.9
NC_016582:1707756:172890317289031729832930Streptomyces bingchenggensis BCW-1 chromosome, complete genomeperiplasmic binding protein2e-0757
NC_008701:195850:2139832139832160312049Pyrobaculum islandicum DSM 4184, complete genomeperiplasmic binding protein2e-0756.6
NC_015680:21500:5110851108530751968Pyrococcus yayanosii CH1 chromosome, complete genomePeriplasmic binding protein5e-0755.5
NC_018645:3977352:3977352397735239784161065Desulfobacula toluolica Tol2, complete genomeiron(III) dictrate ABC transporter substrate-binding protein1e-0654.3
NC_013922:1855000:186017718601771861070894Natrialba magadii ATCC 43099 chromosome, complete genomeperiplasmic binding protein2e-0653.1
NC_008553:329458:341767341767342570804Methanosaeta thermophila PT, complete genomeperiplasmic binding protein5e-0652